barSeed - Barley Seed Development Database

Probe CUST_9963_PI390587928

Source Contig U35_15426

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9963_PI390587928	Hv_44K_v2	CTCTTGGGTTCACGTTATCCATTTCTATGTACAGAGCTGTGGTGCTATGTTCTGAAAAAA	713	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.445	1.594	1.198	0.902	0.307	0.270
Raw	1720.163	2972.349	1954.370	2300.519	273.618	263.182

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_37331.1	1103	4e-23	900 - 956	100	57 / 57	plus
Harvest21	ABC03194	782	3e-25	712 - 771	100	60 / 60	plus
Harvest35	U35_15426	784	3e-25	714 - 773	100	60 / 60	plus

Contig Sequence (784 bp)

>U35_15426 784 Hv_44K_v2
CCCCTCCTCCCCTCCCCAAATCACAAACACCGAAGAAGAGAGGAGACGAAAGGGGATCGC
CGCCGCCGCCGTCGCCGAAGATGACGTCGATGCTGTCTGCGTTCTCGCAGTGGTTCGTGA
ACCCGCGCCGCAACCCGCTGGCCCGCATCCACATGCTCACCATCTCCAACCGCCTCAAGA
ACTACGGCCTGAGGTACGACGACCTGTACGACCCCTACTTCGATCTGGACATCAAGGAGG
CGCTCACCAGGCTGCCCCGGGAGGTGGTCGACGCCCGCCACCAGCGCCTCAAGCGCGCCA
TGGACCTCTCCATGAAGCACCAGTACCTCCCCGACGACGTCCGGGCACTGCAGACACCAT
TCAAAAGCTATTTGAGCGACATGCTGGCTCTGGTGAAAAAGGAGGCAGCAGAGCGGAAAG
CACTGGGAGCCCTTCCCCTCTACGAGAGAACCCTTCCTTGAAGACATTTTACTTGATATG
CGCCACTGTTTTTGCTCCTCGTAGCATCACAATGCATGAAATAAAATGCAGATCATGACA
CTGTTCCTCCTTCCGGTTTCATGTCCATTGCCTGTAGCAGTTTCCTAATTAATCGCGATG
GAATTTCTGTTGCTGTTGCTGATATAAAAGTATTTTTTGGTTGATGGAATTGTTGGTATA
AAAGTCTTCAACAATTCCGTAAAAAAAAAAAAAAAAAAACTGATTGTTGTTTTCTCTTGG
GTTCACGTTATCCATTTCTATGTACAGAGCTGTGGTGCTATGTTCTGAAAAAAAAAAAAA
AAAA

Homology of Contig U35_15426 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g59220.1	127	7e-54	protein\|cytochrome b-c1 complex subunit 7, putative, expressed
Brachypodium v1_2	Bradi1g04740.1	127	3e-61
Arabidopsis v10	None