barSeed - Barley Seed Development Database

Probe CUST_9949_PI390587928

Source Contig U35_15430

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9949_PI390587928	Hv_44K_v2	CGTTTGTATTCTCACATGGATGCAATTTCCAGACAATTTTTGAGCCCCCTGTGAGTTATC	678	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.318	1.172	1.055	0.988	0.385	0.376
Raw	2312.183	3285.939	2553.200	3819.273	511.587	544.814

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55970.3	1674	7e-23	1570 - 1630	98	60 / 61	plus	ABC12283
MLOC	MLOC_55970.1	1750	7e-23	1602 - 1662	98	60 / 61	plus	ABC12283
MLOC	AK366692	1795	3e-21	1652 - 1712	97	59 / 61	plus	ABC12283
JLOC1	JLOC1_36150.3	1895	4e-23	1637 - 1697	98	60 / 61	plus
JLOC1	JLOC1_36150.2	1977	4e-23	1719 - 1779	98	60 / 61	plus
JLOC1	JLOC1_36150.1	1756	4e-23	1498 - 1558	98	60 / 61	plus
Harvest35	U35_15430	741	3e-25	679 - 738	100	60 / 60	plus

Contig Sequence (741 bp)

>U35_15430 741 Hv_44K_v2
GGTGATTGTGAGAGTGCCCAGCCTGGAGCCAAGCCTGCTAAGAAGCCTCGCCGGAACATC
AATGTCCACAGTGCATATCTGCATGTAATTGGGGACTCCATCCAGAGCATTGGTGTAATG
ATTGGAGGGGCTCTCATCTGGTACAAGCCCGAATGGAAGATTATTGATCTCATATGCACC
CTCATCTTCTCTGTGATTGTACTGTTCACCACAATCAAGATGATTCGGAACATACTTGAA
GTCCTTATGGAGAGCACGCCCCGCGAGATCGATGCCACCAGGCTTGAGACTGGTCTCCGT
GAGATGGAAGGTGTGATTGCTGTCCATGAGCTGCACATCTGGGCTATCACAGTGGGGAAG
GTGCTCTTGGCATGCCATGTGACGATCACGCAGGATGTGGATGCTGATAAAATGCTTGAC
AAGGTCATTGGGTACATCAAGGCAGAGTACAACATCAGTCATGTGACCATTCAGATTGAG
CGAGAGTAAGGCACATGTCAGGTAGTTGGGGATAAAGGCATTAACGGTTTATCATCTTAA
TGCGGTTAATGTTAGCTTTGCACACGCAAAGGCGTTGCAGGTTCATCTAGCTGTTGCCTT
TGGTGCTGGAGAAAATATTATATGTACGCGTTTTCATTAGCCCATTAGTTTAATGAACTA
TTAATCGGGTGATGTAGTCGTTTGTATTCTCACATGGATGCAATTTCCAGACAATTTTTG
AGCCCCCTGTGAGTTATCAAC

Homology of Contig U35_15430 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g03780.1	419	5e-97	protein\|cation efflux family protein, putative, expressed
Brachypodium v1_2	Bradi2g38330.2	420	4e-100
Arabidopsis v10	AT2G46800.1	398	6e-77	\| Symbols: ZAT, ATMTP1, MTP1, ZAT1, ATCDF1 \| zinc transporter of Arabidopsis thaliana \| chr2:19238128-19239324 FORWARD LENGTH=398