barSeed - Barley Seed Development Database

Probe CUST_9944_PI390587928

Source Contig U35_15435

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9944_PI390587928	Hv_44K_v2	CTAGGGAAATGATGAGATAATGTCTCGCCGAATCATATTAATTGTCTTGTGTACATGTAA	467	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.181	3.101	1.084	0.702	0.789	0.341
Raw	56.572	90.264	26.444	29.647	10.447	3.136

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC10240	571	3e-25	468 - 527	100	60 / 60	plus	ABC10240
Harvest35	U35_15435	571	3e-25	468 - 527	100	60 / 60	plus

Contig Sequence (571 bp)

>U35_15435 571 Hv_44K_v2
GCACGAGGTGCTGGCCCTTCTTCGCCGAGCAGCAGACCAACGCCCGCTACGCGTGCGTGG
AATGGGGTGTCGGGATGGAGGTCGGCGATGACGTGCGCCGGGGGGTGGTCGAGGCGAGGA
TACGGGAGGTGATGGGAGGAGAAGGGGTGGGAAGGGAGATGAGGCGGAAGGCGGCGGAGT
GGAGCGAGATGGCCGTTCGTGCGACAACACAACCCGGTGGCAGGTCGCTGGCTAATCTTG
AGAGTCTGCTCAAGGATGTACTGCTGGCCGCCACTGGGAATGCTGGGTAGAATTTGGAAT
TCGAGATGCATGTGGATCCAACCGACAGGTTGGGAGAAAGGCGAATTTGAGTTTCTGCAT
GGGCTCTTGATCCAATAAGGCGTGAACTTGGCTATGAGGTTAGCATCGTTTGGTTGGGTT
GTGGCCGTATGAGAAGTTATCCATTGTAGGTTAATTAGTTGGTTGTGCTAGGGAAATGAT
GAGATAATGTCTCGCCGAATCATATTAATTGTCTTGTGTACATGTAATATATTTTCAATT
ATGTTTGATGCTTTGAAAAAAAAAAAAAAAA

Homology of Contig U35_15435 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None