barSeed - Barley Seed Development Database

Probe CUST_9939_PI390587928

Source Contig U35_15439

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9939_PI390587928	Hv_44K_v2	ATGTAGGATCCAACGACCTCATTAACGAGCGATCCGGTTTTGGTGTTTGGTGTTTTTGCA	476	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.264	0.300	0.529	2.076	1.521	2.407
Raw	3.580	6.230	14.035	88.796	21.812	38.385

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60773.1	2988	2e-24	717 - 776	100	60 / 60	minus	ABC03319 ABC38726
Harvest21	ABC03320	583	3e-25	477 - 536	100	60 / 60	plus
Harvest35	U35_15439	583	3e-25	477 - 536	100	60 / 60	plus

Contig Sequence (583 bp)

>U35_15439 583 Hv_44K_v2
GCACACACACACCCACACCCACTCTTCTTCCCCCAACCGTCTCGGATCGGAGCAGAGCAG
AGGCTCTCCCTTGGCCTTCCTCCCTCTCGGCAGCAGGCTCGACCTTTGCATGGCAGCAGT
GGCTACCTCCAAGGGGCGGGTGATCGCTGGGAGCCTCGTCGCGCGCGTCCTTGCCGGCAA
GGCCGCCAACGCCTCCCCGAGGTATGCTCACACGCCTCCTGTGAGCTCAAAGAAAGAATC
AGAGTACATAGTTATAATAACTTCATTTAGTCAATAAAATCTTGGTAACACCCACCCACA
TATATAGGACTTTTAATTAACGCTCACTCATTGGGCTGCCCTATTGCTAGTCAATGCAAT
GGCTTATATATAATCAACTGACGCCGTGATGCGTACGTGCATTGTTTCATCATCGTTCTT
TTGCATCATGAACGGAGTATTTTCCTTACCATCAAGTCAACGTGGTACCGTTGTGTATGT
AGGATCCAACGACCTCATTAACGAGCGATCCGGTTTTGGTGTTTGGTGTTTTTGCAGGAG
GGCGGTGCACGCGTCGGCCTACGACAAGAACGTGGACGAGCAG

Homology of Contig U35_15439 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None