barSeed - Barley Seed Development Database

Probe CUST_9924_PI390587928

Source Contig U35_15440

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9924_PI390587928	Hv_44K_v2	TGAGAGTTTGTAGTTTGTTTTTGGAGACTGAATGAGTGCTGATGACCTGCAATGAAAAAA	1683	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.509	1.485	1.177	0.763	0.356	0.404
Raw	704.858	1028.612	743.434	732.496	124.848	154.616

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_35266.1	870	3e-22	772 - 827	100	56 / 56	plus	ABC03365
MLOC	MLOC_35266.2	539	3e-22	360 - 415	100	56 / 56	plus	ABC03365
JLOC1	JLOC1_22788.1	815	1e-22	744 - 799	100	56 / 56	plus
Harvest21	ABC03365	1754	3e-25	1684 - 1743	100	60 / 60	plus	ABC03365
Harvest35	U35_15440	1754	3e-25	1684 - 1743	100	60 / 60	plus

Contig Sequence (1754 bp)

>U35_15440 1754 Hv_44K_v2
GCAACATATGAAGAAGCTCAAGCCGAAGGCAGAGGAATCCCCATCAACTCCTTCCCCAAG
CCGCAAATCTCCGCCCCCACCCCTCCCGACTCGCCCAGGCCATGTCGTCCTCCCCCGCCC
CCGCGCCGGACGCCGGCGCCGCCGCGATGGCCGTCGACGACTCGTCGGAGACCGACCAGC
TCGACTCTATGTCCACGGAGGACATCGTCCGGGCCACCCGCCTCCTCGACAACGAGGTCC
GCGTCCTCAAGGACGAGCTGCAGCGGAATAACCTGGAGCTCGAGAACGTCAAGGACAAGA
TCAAGGAGAACCAGGAGAAGATCAAGCTCAACAAGCAGCTGCCCTACCTCGTCGGCAACA
TCGTCGAGATTTTGGAAATGAACCCTGAAGATGAAGCTGAAGAGGATGGTGCTAACATAG
ATCTGGACTCACAGAGGAAAGGAAAATGTGTTGTTCTTAAGACATCCACAAGACAGACTA
TATTCCTTCCTGTGATCGGGCTAGTTGACCCTGACAACCTCAAGCCTGGTGATTTGGTTG
GAGTCAACAAGGACAGCTACTTGATATTAGACACGCTACCTTCAGAGTATGACTCTCGAG
TAAAGGCAATGGAGGTAGATGAAAAACCTACGGAGGATTATAATGACATTGGTGGCCTGG
AGAAAGAGATTCAGGAACTTGTTGAAGCTATAGTGTTGCCAATGACACACAAGGAGCAAT
TTCAGAAGTTGGGAATCCGTCCCCCGAAAGGAGTTCTTCTATATGGACCACCTGGGACGG
GAAAGACGTTGATGGCTCGTGCATGTGCTGCACAAACCAATGCAACCTTTCTGAAACTTG
CTGGTCCGCAGCTAGTTCAGATGTTCATCGGTGACGGGGCAAAGCTCGTCCGAGATGCCT
TTGAGCTGGCAAAGGAGAAGGCCCCCTGCATCATTTTTATTGATGAGATTGATGCAATTG
GAACAAAGCGTTTTGACAGTGAAGTTAGTGGTGACAGAGAAGTGCAACGAACTATGTTGG
AGTTGCTGAATCAGCTAGATGGATTTAGCAGTGATGAGAGGATAAAGGTGATAGCTGCAA
CCAATCGTGCAGATATTCTTGATCCTGCTTTACTCCGTTCTGGTCGCCTGGACCGAAAGA
TTGAGTTCCCTCATCCGACGGAAGAAGCAAGAGCTCGGATTTTGCAAATTCACTCAAGAA
AGATGAACGTACATCCTGATGTCAACTTTGAGGAGCTGGCTCGTTCAACTGATGATTTCA
ATGGTGCACAGCTGAAGGCTGTTTGTGTGGAAGCTGGCATGCTTGCTCTACGGAGGGATG
CTACAGAGGTGATCCATGAAGATTTCAATGAAGGCATTATCCAAGTGCAAGCAAAGAAGA
AGTCCAGCTTGAATTATTACGCTTAGTTTCCCGTCAAGTAATCAGAACGCGCTGTTTGTA
ACACTCGGTACCATTTTTATTTGGAATATAGTTTAAATCTTGAACCCTCCTGATTGTGTG
AAGCACTCTTGCTTTGTGCCTGTACCCGCAGAAATTATTTCTAACCAATTGCTCTGTGCC
GAAAAAAAAAAAAATGGTCTACGAGTATAAAAAAAAAAAAAAATGGCATTAGCTGGGTGC
CAGATTGGTGTTCCGAGCGACTCACGACTTGCTTTTCTATCAGTATGTCTGGTCCTGTGT
GCATGAGAGTTTGTAGTTTGTTTTTGGAGACTGAATGAGTGCTGATGACCTGCAATGAAA
AAAAAAAAAAAAAA

Homology of Contig U35_15440 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g07630.1	430	protein\|26S protease regulatory subunit 6A, putative, expressed
Brachypodium v1_2	Bradi3g54490.1	435
Arabidopsis v10	AT3G05530.1	424	\| Symbols: RPT5A, ATS6A.2 \| regulatory particle triple-A ATPase 5A \| chr3:1603540-1605993 FORWARD LENGTH=424