barSeed - Barley Seed Development Database

Probe CUST_9919_PI390587928

Source Contig U35_15445

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9919_PI390587928	Hv_44K_v2	GATTTGGAAATGAAGTATAACGATTCCAGCAATTCAATGGAAGGGAATGGTTACATTTTG	859	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_19622.1	415	2e-24	259 - 318	100	60 / 60	plus	ABC08833
JLOC1	JLOC1_13597.1	414	8e-25	252 - 311	100	60 / 60	plus
Harvest21	ABC08833	898	4e-24	824 - 881	100	58 / 58	plus	ABC08833
Harvest35	U35_15445	936	3e-25	860 - 919	100	60 / 60	plus

Contig Sequence (936 bp)

>U35_15445 936 Hv_44K_v2
TCGAGCACTGTTGGCCTTCTGGACACGCACACTGCCAGTGAGCGAGCGAGCTAGTCTTTC
TTCTGAAACCATGTGCGAGTCCGCCTCCCTGCTGGCGGCAGCCGGAAACCAAGACGGCCA
CCACCACCAAGGGGAAATCAAGGCAGCGGAGATGGACACGAGTGGCCTGCTGGATCACTC
CCCGGCCACCCTCGGCTCGACCCCTCTTCCCTCGCCGTCTCCGGCGCCGCTCGTGTTCTA
CGAAGACGATTACCGATACTACTACGACGACGACAGTTGTCTCCAGGACCAGGACCAGGA
GGGCGATGACGACGCCTACCAACTGCTCGAGGAGGAGGAGGAGGACGTCGCCGCCACTGG
CTCGCTCGCTGCCAGGCTACGTGAGCTCGTCCGCCAGAAGCTAGCCGAGGTGAACGCCTC
CAGCGCGGTCGTCGCGGGGCTCGGCCTCGTCGGGAGCGCCGTCGGCGCCTACTTCCTCTG
GCCCGCGGCGGCGGCTGCTGCCACCGCTGCCACCATGGCAGCGCCTGGTGCCGCCGGCTT
CTTCATCTCCCGTGTGGCGTTTGAAGCCAACTCAAAGCTTTACTTCAAGATCCTCCACAC
TGCCGGAGCGGCAGCGGCTGCCGCCGCTTTTGGTCTGTAGCTGCACGGGAGGGCTGGCCA
CGTACCTACTCTGCTTAATTTCGTGATTTCGTCCCACGCAGGCCGTTTGTGTGCTGGCCG
TTTGCGTTCGTATATCGCTGTTCGCGTGTGGTGGCCTGGTGGAACTCTGGTAGTCTATCT
AGTACAGTACTCCATATCTACTTTTTCAGTGTGTGTAAGCTTGGAGCCATACCCTGTGCG
ATAAGCTAAGGGTGTGTTTGATTTGGAAATGAAGTATAACGATTCCAGCAATTCAATGGA
AGGGAATGGTTACATTTTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_15445 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None