barSeed - Barley Seed Development Database

Probe CUST_9918_PI390587928

Source Contig U35_15446

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9918_PI390587928	Hv_44K_v2	TGTTGTAATGGCTAAAATGGTTTATGAGTTTGAGAATTGGGAGCTGGCAACTTGTGTAAA	726	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73194.1	1044	7e-23	862 - 918	100	57 / 57	plus	ABC01368
JLOC1	JLOC1_48718.1	1057	4e-23	844 - 900	100	57 / 57	plus
Harvest21	ABC01368	1238	1e-23	712 - 768	100	57 / 57	plus	ABC01368
Harvest35	U35_15446	846	3e-25	727 - 786	100	60 / 60	plus

Contig Sequence (846 bp)

>U35_15446 846 Hv_44K_v2
CGGGGCTAGCTCCATTCTCCGGTCCCCCGAAAGCCCTAGCGCCAAGCTCCCCCACCCGCG
GCGGCCGCCTCCTCCTCGCGCCTCCAAGCAGACAAACTCGTCAAGGGAAGATGAGTCAGG
AGACGGTCAACCCCAAGGCCTACCCGCTGGCGGACGCGCAGCTGACGATAACGATCCTCG
ACATCGTCCAGCAGGCCGCCAACTACAAGCAGCTCAAGAAGGGAGCCAACGAAGCGACCA
AGACTCTCAACAGGGGAATATCGGAGTTCGTGGTGATGGCAGCTGACACGGAGCCGCTCG
AAATCCTCCTCCACCTCCCGTTGCTCGCGGAGGACAAGAATGTGCCGTATGTCTTTGTCC
CTTCAAAGCAAGCCCTTGGGCGTGCTTGTGGAGTGACTAGGCCGGTCATTGCTTGTTCAG
TGACCAGCAATGAGGGTAGCCAACTGAAGCAGCCGATCCAGAGTCTCAAGGATGCCATCG
AGAAGCTTCTCATATGATTTATCAAGACCTTTCAGTGTGATGGGCCTCGTGTGACACAGT
TTTTCAGGGGCTTGGACTGGTGATGGTGTCTTGTCTGCTAGGTCTTTTATGTTTTTCAGC
TATATTTTGCAAGACTGTTATGTTAAATCATGCTGCCATTATGTCTGCCATCTTATATTT
GTGACTTGTGTAATCCATAAGACACATGTTTTATGGCAGTTGAATTTTCTCCCTAGACTC
AAGATATGTTGTAATGGCTAAAATGGTTTATGAGTTTGAGAATTGGGAGCTGGCAACTTG
TGTAAAAAAAAAAAAAAAAACTTGTGTGCGATCTCTCATGTCTTGGATTAAAAAAAAAAA
AAAAAA

Homology of Contig U35_15446 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g13800.1	129	1e-68	protein\|ribosomal protein L7Ae, putative, expressed
Brachypodium v1_2	Bradi1g68505.2	129	7e-71
Arabidopsis v10	AT4G22380.1	128	3e-63	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein \| chr4:11812041-11812922 REVERSE LENGTH=128