barSeed - Barley Seed Development Database

Probe CUST_9914_PI390587928

Source Contig U35_41712

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9914_PI390587928	Hv_44K_v2	GGTCACTTTGATCAGACACGTTATTAAGACTTACGTTAAGTGTGTGTTGTATATATATGG	39	GeneList: black MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.307	0.704	0.445	1.392	1.967	3.529
Raw	6.025	24.030	13.137	61.869	31.649	64.673

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376810	2526	2e-24	2266 - 2325	100	60 / 60	plus	ABC05481 ABC36842
MLOC	MLOC_82118.1	1337	2e-24	1085 - 1144	100	60 / 60	plus	ABC05481 ABC36842
JLOC1	JLOC1_54619.1	1434	8e-25	1106 - 1165	100	60 / 60	plus
Harvest21	ABC36842	577	3e-25	40 - 99	100	60 / 60	minus	ABC36842
Harvest21	ABC05481	1074	3e-25	796 - 855	100	60 / 60	plus	ABC05481
Harvest35	U35_41712	577	3e-25	40 - 99	100	60 / 60	minus
Harvest35	U35_16650	2532	3e-25	2252 - 2311	100	60 / 60	plus

Contig Sequence (577 bp)

>U35_41712 577 Hv_44K_v2
TTTTTTTTTTTTTTTTTAGTGCACTAGTTATTATTACAACCATATATATACAACACACAC
TTAACGTAAGTCTTAATAACGTGTCTGATCAAAGTGACCGCATAACCAAGCTCCCATAGG
CTCGTAAACATTTTCGCCGTGACGCGTCGATCTGCTCACTGGGATTTCTCCCTGCGCTCA
CCGGCTCCGGCGGTCTTCGCCGCCTCCCGCTCCACCGGGATGAGCTCCTCTTCGCCGGCG
ACGATCCCCTTCGTGTGCTGCGCTATCCCGTACACCGTCGCGCCCACCGCCTCCACGGTC
GCGCCCACCACCTCCAGAGCGTCTTCCACGATCCTAGCGCCATCGGTGCCTCCACCCTGC
ATGCACGCATCACAGCTGAGCCATCAACTATGGATACATCAAACCTGCGTAAACACCGTA
GGATCAGACGCTTGCGGCTGGACACGACGGGTACGTACCTTCGCCTTCGCCGTCCCGGTC
GTGCCGCTGGCGGTGGCATTTTTGCCGGCGTCCACCGCCCTGTTCTTCACCTCCCCGGTC
TTCTGCGCGACCTGCGACGCGGCGTCCCGGGTCTTGT

Homology of Contig U35_41712 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None