barSeed - Barley Seed Development Database

Probe CUST_990_PI390587928

Source Contig U35_17825

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_990_PI390587928	Hv_44K_v2	GGCCATGTGGCTCAAGAATACATGACAGTACACAGATGTATCAAAGAGAAACATTACCAA	870	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.232	0.433	0.884	2.072	1.294	1.541
Raw	6.076	17.640	33.401	118.389	27.628	34.982

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376803	1053	2e-24	984 - 1043	100	60 / 60	minus	ABC01661 ABC13588
Harvest21	ABC07507	945	3e-25	871 - 930	100	60 / 60	plus	ABC07507
Harvest35	U35_17825	945	3e-25	871 - 930	100	60 / 60	plus

Contig Sequence (945 bp)

>U35_17825 945 Hv_44K_v2
GCAGGCACGAAGCCGGTCTTGGTCTCACTCTCACCGCAAGTGAAGGCATCGTCATATGGA
GGAGGCGAGCGCCGAGGCCGTGGCCATGGCGAGCGGCATGGCGCCTGGACCGGAGGTCAG
GACGATGAAGGTGGTGGCGGCGGTGGACGCGAGCGAGGAGAGCCTGCACGCGCTCTCGTG
GGCGCTCGACAACGTCGTCCGGCTCCACCCCGGCGCCTCCGTCGTCGTCGTCCACGCCCA
GCACCCCGTCGACCACTTCGTCTACCCCGTCGCCGCCCACGGCCTGGCCTACGCGCCGCC
GACGGCGATGGACTCCATGAGGAGGGCGCAGGCGGAGAACTCCCGGAAGGCGCTGGCCCG
CGCGCTGGACGTGTGCAGGCAGAAGCAGGTGAGCGCCACGGCGGCGGTGGTGGAGGGCGA
CGCCAAGGAGGCCATCTGCCAGGCCGTGGAGGACGCGCGCGCCGACCTCCTCGTCCTCGG
CAGCCGCGGCCTGGGCATGATCAAGAGGGCGTTGCTGGGCAGCGTGAGCGACTACCTCGC
CCATCACGCCTCCTGTCCCGTCCTCATCGTCAAGCCGCCCAACAAAGCGCACCACAAGTG
AAGCCCGGCCAAAGGGAACCACATCTACTTGTTCATTACTACTACTGTACTGCATCAAGC
GACTTGTGCTTCCAATAACGACTTAGAAGATGGAGTGATCGAGATCCTGTGTAGTACGTT
TGGTGTGCAATCATCTCGATCATGTATAGTACGTCCAGAAGTTTAGTCGCAATCTCAATC
TCAATAAGTTCCTCTACTAAAAAAAAAAAAAAAAACTTGTAGTGCCCCCCCCCCCCCCCA
AAAAAAAACTTGTAGTGTTCCTTCAAGCACGGCCATGTGGCTCAAGAATACATGACAGTA
CACAGATGTATCAAAGAGAAACATTACCAAAAAAAAAAAAAAAAA

Homology of Contig U35_17825 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g53900.4	183	2e-77	protein\|universal stress protein domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g08517.1	209	1e-83
Arabidopsis v10	None