barSeed - Barley Seed Development Database

Probe CUST_98_PI390587928

Source Contig U35_48871

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_98_PI390587928	Hv_44K_v2	CCTATTCAGTTGCTATATGACACAAAGTTGATCTTGATTTACACTGTTATGCACTGTTGA	38	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361020	1231	2e-24	1157 - 1216	100	60 / 60	plus	None
MLOC	MLOC_17093.5	1245	2e-24	1139 - 1198	100	60 / 60	plus	None
MLOC	MLOC_17093.1	1420	2e-24	1314 - 1373	100	60 / 60	plus	None
JLOC1	JLOC1_11806.1	1344	8e-25	1226 - 1285	100	60 / 60	plus
Harvest35	U35_48871	535	3e-25	39 - 98	100	60 / 60	minus

Contig Sequence (535 bp)

>U35_48871 535 Hv_44K_v2
TTTTTTTTTTTTTTTTTCCTCTTGTTGATTCGTTTATTTCAACAGTGCATAACAGTGTAA
ATCAAGATCAACTTTGTGTCATATAGCAACTGAATAGGACCAGTAAATTAAACTGCAACT
CAAGAATAAATGTTCAAGACAACAACACCACCATGTGCCCACGCACACACACAGAAACAT
CAAACTGGGTAGAGTTCAACATATTCAGTCTCATGTTAGCCTGACATCCTTGAGAAGTCT
TGCAGCCATGGCCCCGGACCTCCTGATTTCCCAGTCGTCCACGTCTTCTTTTGAAGCCGT
ACAAGGTTCATCTTTCACTCCGGGGTCTTCGTCTTCTCCCGGGTTGGAGGCATCGTCCTC
CTCCTCCTCCTCGGTGCTCCCATTGCTGTTGGGTTCGGCCTCGGGGACCGACGAAGCTTT
GAGGTCCATCATGTAAAGATTTATGCTAGGATGTTGATATTTAGCATCCATCTTTGATTT
GGATATAGTTTTCACATTAAAGTTGGTTTTCCACATTTCCATCATCTGCTCATGG

Homology of Contig U35_48871 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g55460.1	299	2e-54
Arabidopsis v10	None