barSeed - Barley Seed Development Database

Probe CUST_9898_PI390587928

Source Contig U35_39401

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9898_PI390587928	Hv_44K_v2	GTTCTTGAGTGCAAGATTCGTTCGTTGGAAACATTTTTGAGGTCCAGAAGGAACAAGAGA	582	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_3970.1	4662	2e-24	1764 - 1823	100	60 / 60	plus	ABC12365 ABC44521
MLOC	AK361972	4581	7e-23	2188 - 2247	98	59 / 60	plus	ABC12365 ABC44521
JLOC1	JLOC1_2403.1	4657	8e-25	1766 - 1825	100	60 / 60	plus
Harvest21	ABC35528	645	3e-25	583 - 642	100	60 / 60	plus
Harvest35	U35_39401	645	3e-25	583 - 642	100	60 / 60	plus

Contig Sequence (645 bp)

>U35_39401 645 Hv_44K_v2
GGAAAACCTTCTGAGAAGGCATCTATAAAGCTGTGGGCCAAAGGCGATCTTCCTACCAAC
ATATCTTACCGCGGAGGAGGATTGTAGTATTCAATACAATGGGTTTGATGGAATTAGTTT
TTAACAGGCCTGTCGACATTCTAAGGAAGTTGTTTGATGGGAACACCTTGAGATCCCAAA
TAGAAGAGTTCTTTAACCGCTTTGGTGCTGGAGAGGCTGCAGCAATGTGCTTAATGCTAG
CTGCGAAGTTACTTTACACTGAAGATAGTCTGATAAGCAACACGGTTTCTGAGAAGGCTG
CTGAAGCATTTGAGGACCCTGGGCTTGTTGGAATGCCTCAACTTAACAGCACTACTGCTT
TGTCTAACACTCGAGCTCAGGCTGGAGGCTTTAGCATGGGACAAGTTGTTCAGGAAGCAG
AACCTTTGTTTTCCGGTGCATATGAAGGGCTTTGCTTATGCTCATCCAGACTTCTGTATC
CTGTGTGGGAGCTTCCAGTTATGGTGGTTCGGGGACTGATAGGTTCCAATGACCATGGGG
ATGGTGTGGGTCGTTTGTAGACTTTCTACTGGTGCCATGAAAGTTCTTGAGTGCAAGATT
CGTTCGTTGGAAACATTTTTGAGGTCCAGAAGGAACAAGAGAAGA

Homology of Contig U35_39401 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g20090.1	1476	8e-85	protein\|NUP155, putative, expressed
Brachypodium v1_2	Bradi1g69510.1	1463	1e-95
Arabidopsis v10	AT1G14850.1	1464	3e-63	\| Symbols: NUP155 \| nucleoporin 155 \| chr1:5116921-5123259 REVERSE LENGTH=1464