barSeed - Barley Seed Development Database

Probe CUST_9881_PI390587928

Source Contig U35_11134

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9881_PI390587928	Hv_44K_v2	CATGCATGCTCCATTTCTCATGTGCTTTAGCAGGATTCCTAGTTCACATTATCTTTTATT	530	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37946.5	3672	7e-23	1153 - 1212	98	59 / 60	plus	ABC17591
Harvest21	ABC25478	630	3e-25	531 - 590	100	60 / 60	plus
Harvest35	U35_11134	630	3e-25	531 - 590	100	60 / 60	plus

Contig Sequence (630 bp)

>U35_11134 630 Hv_44K_v2
CAGCAAGCTTGTTGGCTCAGATTCAAGCAACAGGAGCTGATATAGTAAAAATTGCGACCA
CTGCTACTGAAATTGTTGATGTTTCAAGAATGTTTCAAATACTTGTACACTGCCAAGTAA
GTTTGCTGTCTAATTCTAAGCAAGCTCAGCACACACTAGTGTTAGTCGTTGCTATTTTTC
GTGTTTATAGTATTGGTCCGCAAGACTGCTCTATATACCTCATTTAGCCTAACATCTGCT
GATGAAGTGATGATCCCTTAAGCTAAGGTCGAAATGATAATATTCTCTATGAGGAATCTT
CTCTAGTAGATCTGTACTTATATCATCATATCCAGTGTAAGGACGTCCAAATATTGCTAT
TTTTAGTATAAGTATTGTTGTAGATAAATAGATAATGTACTGCGATGGCCCTTAATAGCA
GAGAAAACTGTAAATTTCTTAGCTGAGAATGCACTTTCGATGCACAGGCATCAATTTAGG
GGTTCTCGCACTTGAGTGAGATATTATGCTATGTGACATGTCCATGACTCCATGCATGCT
CCATTTCTCATGTGCTTTAGCAGGATTCCTAGTTCACATTATCTTTTATTTGAATAATGC
ATTANGAAAAGCAGGTGCCGATCATAAGAC

Homology of Contig U35_11134 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None