barSeed - Barley Seed Development Database

Probe CUST_9876_PI390587928

Source Contig U35_23110

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9876_PI390587928	Hv_44K_v2	AAGGATCCCACCAAACACGCTGGTGGAGTTGGTGGCTGGTGATACACTGCAGCTCGGGGC	415	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69909.1	3798	7e-23	3427 - 3486	98	59 / 60	minus	None
JLOC1	JLOC1_46355.1	3790	4e-23	313 - 372	98	59 / 60	plus
Harvest35	U35_23110	476	3e-25	416 - 475	100	60 / 60	plus

Contig Sequence (476 bp)

>U35_23110 476 Hv_44K_v2
ACATTTCGAATCCTCCTCGCGCACAGAGAGGCGTCATAATTTCCTCCTCCTCGCGCCGCG
CATCCAACCAGCCCACACGCGCAGGCATGGCAACGACGACGGCGGCGGGGGACGTGGAGG
CGGGGGCGGGGTCTCCGATCGCGGCGTTCGCGGTGGCCAAGGGCGGCGTCGTGCTGAAGC
ACATCTTCCTCAACGGGCCGCCGACGGAGGCGGCGCGGCGCGGCCCGGATCGGGATCGGG
TGGAGGAGGAGGCGGAGGATCCGCCGGTACTGTTTGGGCGGCACCCCGACTGCCACGTCC
TCATCGACCACCCCAGCGTCAGCCGCCGCCACCTCGAGGTCCGCTGCAAGCGGCGCCAGC
GCCGGATCACCGTCACCGACCTCTCCTCCGTGCATGGGACCTGGGTCTCGGGCCAAAGGA
TCCCACCAAACACGCTGGTGGAGTTGGTGGCTGGTGATACACTGCAGCTCGGGGCC

Homology of Contig U35_23110 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g24400.1	1151	1e-59
Arabidopsis v10	None