barSeed - Barley Seed Development Database

Probe CUST_9873_PI390587928

Source Contig U35_23113

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9873_PI390587928	Hv_44K_v2	GACTGTTTCTTGATTTAGTTGTATTGCTAGAAGTTGAACTTCTGCAGCTATATATTGCAG	505	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370210	1280	2e-24	1151 - 1210	100	60 / 60	plus	ABC30472
MLOC	MLOC_54143.1	2085	2e-24	1299 - 1358	100	60 / 60	minus	ABC30472
JLOC1	JLOC1_34840.8	2138	8e-25	1340 - 1399	100	60 / 60	minus
JLOC1	JLOC1_34840.6	3495	8e-25	2697 - 2756	100	60 / 60	minus
JLOC1	JLOC1_34840.5	4229	8e-25	3431 - 3490	100	60 / 60	minus
Harvest21	ABC30472	381	3e-25	220 - 279	100	60 / 60	plus	ABC30472
Harvest35	U35_23113	664	3e-25	506 - 565	100	60 / 60	plus

Contig Sequence (664 bp)

>U35_23113 664 Hv_44K_v2
ACGCTACCGCCGCCGCCGAGCACGAGGACCCGGCCGGCCGCTCCCGCCATGGCCATGGCC
ACAGGAAGATGAGGCACGACGACGACGACGAACGGCGAGCCGACTCCGACGAGCCGGAGG
GAGACAGGGCCGTCTCTGCCCACTCAAAGCTGACATTCAAAGACGTGGAAGAGGCGGCGC
AGGCCGCGTTCGAATCGGCTGCCACGGCGGCGGCCGCCGCCAAGGCTGCCATAGAGCTCT
CGCGAGCCGGGTCCGGGAGCCCCGACGGCAGCTACAGGAGGAAGGCGCACGCCGCCGACG
AGACGCACCACCGCGGCGATGATCTGGCCGATGGCAAGGCCTTGGAGAGGATCGGACATG
TTCGGAACTACAGTTCTGATGCAGAAGATCTGCCGGAGAAACGCGGAGAACAGCAGGATA
CGCCCAGGAGCAGGCCGGCTTCAGTCAGGACGAACAGAGGACTCTAGTAGTTTAGCTGCA
GCCATACCCATATGGCAGCAGCAGAGACTGTTTCTTGATTTAGTTGTATTGCTAGAAGTT
GAACTTCTGCAGCTATATATTGCAGATCATTCATTATTAAATTTTGTGTATGCGATGTAA
ATAGAGAATTGGGGAAGTAAATATTAATATGATTCCGATTTTTCACCAAAAAAAAAAAAA
AAAA

Homology of Contig U35_23113 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None