barSeed - Barley Seed Development Database

Probe CUST_9872_PI390587928

Source Contig U35_23114

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9872_PI390587928	Hv_44K_v2	TCTGACTCAAGAGGAGATGGTTGTATCACCAGGAAATCAGAATCCAGAGTCTTCGTTTGA	637	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.449	0.732	1.378	1.937	1.065	0.877
Raw	37.160	97.445	157.204	355.022	67.660	60.296

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_47055.1	1801	2e-24	631 - 690	100	60 / 60	plus	ABC16755
MLOC	MLOC_47055.2	1332	2e-24	630 - 689	100	60 / 60	plus	ABC16755
Harvest21	ABC17094	720	3e-25	638 - 697	100	60 / 60	plus
Harvest35	U35_23114	720	3e-25	638 - 697	100	60 / 60	plus

Contig Sequence (720 bp)

>U35_23114 720 Hv_44K_v2
CACCCCACCCCACTCTCCTCCCGCTCCGGAGGGCGATCTCGGGAGGAACGGCGGGCGTCC
CGCGGCGAGTTGTATTATACCGTTGTCCGCGACGATTCTGCTGTTAATTTTGGCAAGTTG
GTGACTACCTGGAAGCTGCAATGACTGAAAACACCCAGGGCAGTGGCCGACGAGCCTTTG
GAGACCTGACGAATGTCCTTGGCAAGCGGCCAGCCTCATGCGATCTGGAGAAGAGTGCAG
GTGGAGTCAAGATTAGTCGGGTTGAAAAGGTCGTTGACCCTAGGAAAGAGCCTCATGAAA
AGGCTAAGGCCAATGTTGGGGCATCAGGAAACCTTATTGAAGTTTTGGTCGATGGTATTG
GCAAAGAGGACTTTGCAAGGACTTCAATTTTCCGTGGAGCCAAGGTTCAGCACATGGCTG
CTCAGGCAGCTGGGCTACTATCCAAGGATGATGATGATGTCAGGAATCGTTCTCTATCGT
TGGATTCTTCTGGCCTCAACGACAAGGCGGAGTCTTCCTTGGAATCAGAGGGTGGCTGTG
CAGGGGAAGATGATGATGACACTGATAGTGAGTTGCTGCCATTTGCCAGTGAGGCTAGTA
AGATTGTAATTAATGATAAGAATAATGAGGGTGAATGTCTGACTCAAGAGGAGATGGTTG
TATCACCAGGAAATCAGAATCCAGAGTCTTCGTTTGACGCTGCAGCTCGTGATGACATGA

Homology of Contig U35_23114 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g51640.1	330	1e-66	protein\|expressed protein
Brachypodium v1_2	Bradi3g59010.2	312	4e-89
Arabidopsis v10	None