barSeed - Barley Seed Development Database

Probe CUST_9867_PI390587928

Source Contig U35_23119

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9867_PI390587928	Hv_44K_v2	ATGCTCAGTTCAGTTATATATGCACGTGACCATTTCCTAAAACCCGGTGGTGCTGTTCTC	951	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.197	0.955	1.248	1.033	0.261	0.275
Raw	141.199	175.746	204.709	271.263	24.741	27.516

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54486.1	3876	7e-23	2760 - 2819	98	59 / 60	plus	ABC15562 ABC16217
JLOC1	JLOC1_35070.1	3113	4e-23	2011 - 2070	98	59 / 60	plus
Harvest21	ABC17280	1044	3e-25	952 - 1011	100	60 / 60	plus
Harvest35	U35_23119	1044	3e-25	952 - 1011	100	60 / 60	plus

Contig Sequence (1044 bp)

>U35_23119 1044 Hv_44K_v2
GGCGCGTGGTTCGACTCTGATACCTCCCTATTCGCGCACTGCGGCAACGAGCACGGGTTC
GATTTCCCAAGCTCGTGAGGGAGCTCGGGCTGGATTTCTACGGATGCATCAAGCTCATCA
ATTTTGTGCGCTCCAAGGTTGCAGAGAACAAAAGTTGGAGCTGTGCAGAGATTTCCCAAC
TTGAGGGGAAGGTTCCATGGGCGGATGACTCGTACTTGAAACCATTCATGGAAGATGACT
CGCTGCTGCACAGTTTGTCCATCTTTGACGATGAAGATGACGAGGACTGTGGGATGCCAG
TGGAAACAGGGGAGTGTTCAGCGGGCAATGGGAGGTCAGGTGAACTGCAGGGGAATTGTC
TAAACACCATTATCGACGATTGTTCTGACATCAGTGCTAGGTTCGAGAAAGCAGTTACTA
CTGAAAGTAATGGTGGAGATAACAATGGGTCTCTTTCGGAGGAACCGACTGATAGGCAGC
TAAAGATTACACGGGCAAGTGTTACTGCCAAGGAAATTAAAAAAGTGGATGACAACTACT
TTGGGTCTTATAGTTCATTTGGCATTCATAGAGAGATGCTGGGCGACAAAGTAAGAACAG
ATGCTTACAGAGATGCTCTTTTGGATAATCCTAGCCTCATGAATGGAGCAACTGTACTGG
ATGTTGGTTGTGGTACAGGAATTCTAAGTCTTTTTGCAGCGAAGGCTGGTGCATCAAGAG
TTATTGCTGTTGATGGGAGTGCAAAGATGTCTTCTGTGGCTACCCAAGTAGCAAAAAAAC
AATGGTCTATTATATGATGAAAATATGAAAATGGAACAAAAGCATAGTTCTGAAGTGATA
ACTGTTGTGCATACCAAGGCTGAAGAGCTAAACCATAAAATAGTAATTCCGCCAAATGGC
TTTGATGTGTTAGTGAGTGAATGGATGGGATATTGCCTGCTGTATGAATCCATGCTCAGT
TCAGTTATATATGCACGTGACCATTTCCTAAAACCCGGTGGTGCTGTTCTCCCGGATACT
GCAACAATTCTTGGTGCTGGTTTC

Homology of Contig U35_23119 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g44640.1	621	6e-144	protein\|ZOS7-13 - C2H2 zinc finger protein, expressed
Brachypodium v1_2	Bradi1g19940.1	618	3e-157
Arabidopsis v10	AT3G12270.1	601	2e-79	\| Symbols: ATPRMT3, PRMT3 \| protein arginine methyltransferase 3 \| chr3:3910642-3913122 FORWARD LENGTH=601