barSeed - Barley Seed Development Database

Probe CUST_9866_PI390587928

Source Contig U35_11140

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9866_PI390587928	Hv_44K_v2	AACTTTTTTGATAAGCTAAGAGGTGTGCTCACTTCACCGGAGGGTGGAAATGTGGGTGAT	454	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60893.2	3120	7e-23	337 - 396	98	59 / 60	plus	ABC25896
MLOC	MLOC_60893.1	3114	7e-23	345 - 404	98	59 / 60	plus	ABC25896
JLOC1	JLOC1_39745.1	3134	4e-23	343 - 402	98	59 / 60	plus
Harvest35	U35_11140	515	3e-25	455 - 514	100	60 / 60	plus

Contig Sequence (515 bp)

>U35_11140 515 Hv_44K_v2
ACTCCACTCCCTCCCCTCCCCTCCCCTCGTCTCCGGCGAAGTCGTCGTCGGCGGCGGCGC
CGCCATGAATGTGTTCGCGGGGGTCGGCGGCAGCGCGGGGGAGCGCGGCGGGGCGGGCGC
GGGGTCCGGGGCGGCGGCGAGGGACGCGGGGTCGGCGGACTTCGGGGCGCTGCTGGAGCT
GACGCCGCACAAGATGGCGGTGTGCCACCTCGTGCAGGTCTTCGCGCCGCCGGCGCAGCA
GCAGGCCCCGCCGTTCCCCTTCGAGTCGGCCGCCCACCACAACCGCCTCGGGCTCTTCCT
CTTCGCCCTCACCCGCTCATGTGAGGATTTCCTGGAACCGCCGCTGGAAGAGCTTTTGAG
GCAGTTGAAGGCGGTAGATGACTTAGTTAATGGTTGGCTTTGTGAGCAGCTGACAACCAC
ACTGGCTGGGCTTAACTCACCAGACGATTTGTTCAACTTTTTTGATAAGCTAAGAGGTGT
GCTCACTTCACCGGAGGGTGGAAATGTGGGTGATG

Homology of Contig U35_11140 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None