barSeed - Barley Seed Development Database

Probe CUST_9863_PI390587928

Source Contig U35_11145

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9863_PI390587928	Hv_44K_v2	ATTCTGGGATCTGCAGGACTACCTGGACATCCATAAGCTTAAATCTAACGACATACACGC	697	GeneList: white MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.048	1.291	1.671	1.253	0.353	0.287
Raw	401.781	812.193	867.618	1063.933	101.050	90.207

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66040.1	3032	2e-24	2203 - 2262	100	60 / 60	plus	ABC06606
JLOC1	JLOC1_43505.1	3260	8e-25	2430 - 2489	100	60 / 60	plus
Harvest21	ABC27461	632	3e-25	573 - 632	100	60 / 60	plus
Harvest35	U35_11145	757	3e-25	698 - 757	100	60 / 60	plus

Contig Sequence (757 bp)

>U35_11145 757 Hv_44K_v2
AAGAGAATGATGAGATGGAATATGATGATGATATTGGAGAGGAAGATGGTATGAATAGTG
ACCCTGAAGAGGAGACAAAATATGAACTTGATAACAACGATGATGCAGTTGAGTCTGGTG
CAGAATCAGAAGGGAATAGTGAAGAACATGTGTCAGATTCTGGTAACAAGACAGGGAAAT
TAGAAGGTAGGCTTGCAGCTGGTAAACTCAAGAAGGACAAAAATGAGACAGTTGAAAACT
TGGAGGAGCAGAAGCAGGCACAGATAACCCAGAAACGCAGCAAGAAGTTAAAGCTGACTG
TTCATGTTGAGAGCGCAGATTTAAAATTTGAGGTTCACTACATCTTGCACAAGGAACCAC
ATATTTTACTATCCCAGATTGCCCAGAAGACATTGAAGTCCCTATTTGTCAGTGCATCCC
ATAACAAAAGCATCAGTGAATGCACAGTTGTTTGGCCGGAGGAGAAATATGATTCCGCTA
AAGAGAAGAAGAAAGGTGATTCCTCTCAAGGAGATGTACAAGGTGGTTCCGCTCAAGAAG
AAGAGAAGAAAGACGATTCCACCAAGAAGAAGAAGAAAGGTGATTCTACCACTAAAAAGA
AGAAAGGTGATTCCTCTCAAGAAGAGAAGAAAGACGATCCGACTAAAAAGAAGAAGGAAG
AAAGACAACTGCAAACGTCAGGAGTGGACTTTGAGGTATTCTGGGATCTGCAGGACTACC
TGGACATCCATAAGCTTAAATCTAACGACATACACGC

Homology of Contig U35_11145 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g02620.1	1074	4e-62
Arabidopsis v10	None