- Probe CUST_9859_PI390587928
- Source Contig U35_23121
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_9859_PI390587928 | Hv_44K_v2 | TGTCTGCTTGACTGTAATAATCAATCTCAAGGCGTGCGGTCATTTTTATTCCTCAAAAAA | 514 | GeneList: darkorange MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.849 | 0.944 | 1.685 | 1.605 | 0.676 | 0.447 |
| Raw | 15826.620 | 25082.233 | 41612.500 | 56371.500 | 9652.680 | 6768.240 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_78942.1 | 673 | 3e-22 | 572 - 627 | 100 | 56 / 56 | plus | ABC30133 |
| JLOC1 | JLOC1_52612.1 | 727 | 1e-22 | 626 - 681 | 100 | 56 / 56 | plus | |
| Harvest21 | ABC30133 | 280 | 3e-25 | 210 - 269 | 100 | 60 / 60 | plus | ABC30133 |
| Harvest35 | U35_23121 | 585 | 3e-25 | 515 - 574 | 100 | 60 / 60 | plus |
Contig Sequence (585 bp)
>U35_23121 585 Hv_44K_v2 CCACAACCCACAAATCAAACAGACTGCAAACACCAAGCACCACAGTCATACCATCGCCGA CAATGGCGCTCCAACAACTCTACCTCTGCTTCCTGTGCATGCTCCTCCTCCACCTCCACG TCCTCCCTCTCGTCGGCGGCCGAAGCCTCCCGCCACAGATGGACGCCATCTTGGCTAGCG ATAACTGCTACAATACAGTGAAGGGTGTGCCGAGTTGGTGCTCCGGACAGTTCATTCGAG CCCTCTTCAACGGTGCCAAGAGCTTCCCCATCGACGAGTCCTGCTGCGTGTTGCTCGCCT GCTTCGCGGAGCTGACATGCGGCCCCGCGATCCTTAGTGTCTGCCCGCCCCCGAAGAAGT TCACAGATTGCCCACCGAAAAAGGCCGGCGGTGTGGTCTAACTGATAGGTGTAGCCTAGA TGCATGTGTGGTTGTGTGATTTGCAATTCGAACTTAATTTGGCCGTAGGTGGTGTGATCT GCAATTCGAACTTAATTTGGCCTTACGTGGACGATGTCTGCTTGACTGTAATAATCAATC TCAAGGCGTGCGGTCATTTTTATTCCTCAAAAAAAAAAAAAAAAA
Homology of Contig U35_23121 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |