- Probe CUST_9857_PI390587928
- Source Contig U35_23123
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_9857_PI390587928 | Hv_44K_v2 | GTAAATACCACCCCGAAATAATAACAAGAACGTGCACACAGTTCCGGTTCGTGTAAAAAA | 398 | GeneList: bisque4 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.328 | 2.042 | 1.099 | 0.774 | 0.318 | 0.255 |
| Raw | 34.497 | 84.214 | 38.511 | 44.803 | 5.306 | 4.260 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_54747.1 | 807 | 9e-22 | 1 - 55 | 100 | 55 / 55 | minus | ABC21205 |
| JLOC1 | JLOC1_35251.1 | 876 | 5e-22 | 72 - 126 | 100 | 55 / 55 | minus | |
| Harvest21 | ABC21205 | 465 | 3e-25 | 8 - 67 | 100 | 60 / 60 | minus | ABC21205 |
| Harvest35 | U35_23123 | 465 | 3e-25 | 399 - 458 | 100 | 60 / 60 | plus |
Contig Sequence (465 bp)
>U35_23123 465 Hv_44K_v2 CTTCTCCGGCGAGCCGGCTGCGGAGGAGGAGAAGAAGCACGAGAGCCACGAGACCGAGCA CTGGGCCCGACCACCGGTAAGTTAGCTGCGGGCTGTGGCAGAGGCGGGAAGAGGCGAGGC GCGCCAAGGTGATACGAGCGGGGGGTGCCTGCATGGTGGCCCCAGTTGTCAGTGACGGCG CGCGGTCGACGATAGGTGGTCTCGAGCCGCGACCGTGATGGGCGCGTGCTCGGGGTGGGT AGGGGAGGTGACCGGTGACTGGCCTAGAAATGCGGGTTTTGGAATGAATTTCCGTGGTCT TTTGCTGTTTGGAGTGTTGCGCTTGGGATCGTGGTGCTCAACGGACCCAACTTGTTGTGT TGTTGCGTGTTTGCAGCCGTATCAATGCACGGATGGATGTAAATACCACCCCGAAATAAT AACAAGAACGTGCACACAGTTCCGGTTCGTGTAAAAAAAAAAAAA
Homology of Contig U35_23123 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |