barSeed - Barley Seed Development Database

Probe CUST_9847_PI390587928

Source Contig U35_11152

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9847_PI390587928	Hv_44K_v2	AGTACCTGCAACCGGTCTTCTTCAACACGTACGAGGCCAAGGTGGACCCGCAAAAGAACG	145	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74676.1	1514	2e-24	818 - 877	100	60 / 60	minus	ABC04194 ABC04195
JLOC1	JLOC1_49791.1	690	8e-25	477 - 536	100	60 / 60	minus
JLOC1	JLOC1_49792.1	1501	8e-25	623 - 682	100	60 / 60	plus
Harvest21	ABC25759	459	3e-25	146 - 205	100	60 / 60	plus
Harvest35	U35_11152	460	3e-25	146 - 205	100	60 / 60	plus

Contig Sequence (460 bp)

>U35_11152 460 Hv_44K_v2
CTGACCCCGGTGGCGAACCTGTTTGGAGCGGTGATGGGTCCCAAGTACGACGGTAAGTTC
CTGCACGACAAGATCAAGAACCTCACCAATGACGTGACCGTCGCCGACACCGTCACCAAC
ATCATCGTGCCGACGTTCGACATCAAGTACCTGCAACCGGTCTTCTTCAACACGTACGAG
GCCAAGGTGGACCCGCAAAAGAACGCGCACCTCTCCGACATCTGCATCAGCACGTCGGCG
GCGCCCACCTACTTCCCGGCGCACCACTTCACCATCCCCGACCCCCTGGGCAAGATGCCA
GACCGTGAGTACCACCTCATCGACGGTGGTGTGGCTGCCAACAACCCCACCATGGTCGCC
ATGTCCATGATCACCCAGGAAGTGATGCGCCGGAACCCGGACTTCACGCTCGGCAAGCCC
GCCGAGTACGGAAACTACCTCATCATCTCTATCGGCACCG

Homology of Contig U35_11152 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g39990.1	418	5e-65	protein\|patatin, putative, expressed
Brachypodium v1_2	Bradi4g13670.3	310	7e-76
Arabidopsis v10	None