barSeed - Barley Seed Development Database

Probe CUST_983_PI390587928

Source Contig U35_29802

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_983_PI390587928	Hv_44K_v2	ACAATGAGCTTGTGAGGACTCATACCCTTGTGAAGAATGCCATTGTGCAAGTTGATGCTG	311	GeneList: darkturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.604	0.672	1.260	1.469	0.918	1.090
Raw	18860.200	32814.743	53853.567	97041.600	21556.267	28327.167

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251391.1	1440	7e-23	793 - 852	98	59 / 60	plus	ABC01024 ABC04901 ABC04902
MLOC	AK358692	992	7e-23	340 - 399	98	59 / 60	plus	ABC01024 ABC49887
JLOC1	JLOC1_41719.1	1340	4e-23	470 - 529	98	59 / 60	plus
Harvest21	ABC29275	405	3e-25	312 - 371	100	60 / 60	plus
Harvest21	ABC52387	714	1e-23	308 - 367	98	59 / 60	plus
Harvest21	ABC01024	1138	1e-23	499 - 558	98	59 / 60	plus	ABC01024
Harvest35	U35_29802	405	3e-25	312 - 371	100	60 / 60	plus
Harvest35	U35_14504	1033	1e-23	338 - 397	98	59 / 60	plus
Harvest35	U35_14503	850	1e-23	308 - 367	98	59 / 60	plus

Contig Sequence (405 bp)

>U35_29802 405 Hv_44K_v2
CTCCTCCACACGTACCACCTTCCTTCACATGGCGGCTGAACACCACAGAGACAGGGGCGT
CCTATGCGGCGGCGGCGCCTTCGCCGACCGCAGTGGCCAGGGCGGCTACGGCGGCGACCA
CCACGACCAGCAGAAGCAGCCCGCGATGATGTGCGCCCTGAAGCCCGCGACGGCGGCCAC
GGCCGCCGGGTCGTTGCTTGTGCTGTCCGGGCTGATCCTGGCCGGCACCGTCATCGCTCT
CACCGTGGCGACGCCCGTGCTGGTCATCTTCAGCCCGGTGCTGGTGCTGGATGTGGTTTA
CAATTCGTCAAACAATGAGCTTGTGAGGACTCATACCCTTGTGAAGAATGCCATTGTGCA
AGTTGATGCTGCCCCTTTCAAGCAGTGGTACCTGACTCATTCTGG

Homology of Contig U35_29802 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None