barSeed - Barley Seed Development Database

Probe CUST_9825_PI390587928

Source Contig U35_35116

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9825_PI390587928	Hv_44K_v2	AGATGATACCCATGATTTGTTCGTAGTTCGAGTCTATTGTTTTCTACTCCTTTCGTTCCT	736	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72102.1	1207	2e-24	1070 - 1129	100	60 / 60	plus	ABC47068
MLOC	MLOC_72100.3	1872	2e-24	1796 - 1855	100	60 / 60	plus	ABC47068
MLOC	MLOC_72100.4	2214	2e-24	1896 - 1955	100	60 / 60	plus	ABC47068
MLOC	MLOC_72100.1	2395	2e-24	2077 - 2136	100	60 / 60	plus	ABC47068
JLOC1	JLOC1_47963.2	2417	8e-25	2071 - 2130	100	60 / 60	plus
Harvest21	ABC50444	679	3e-25	128 - 187	100	60 / 60	minus
Harvest21	ABC21890	635	4e-24	574 - 633	98	59 / 60	plus
Harvest35	U35_48556	679	3e-25	128 - 187	100	60 / 60	minus
Harvest35	U35_35116	835	3e-25	737 - 796	100	60 / 60	plus
Harvest35	U35_13279	637	4e-24	574 - 633	98	59 / 60	plus

Contig Sequence (835 bp)

>U35_35116 835 Hv_44K_v2
TATAGGGCGAATTGGGCCCTTTCCAACATGCTCGAGCGGCCGCTGGACTACCCAAGAGGT
GATAACATCGTGCGAGAGACTTGCCGGCCAAGATGCCAATGTGACTACCGTGCCTGTCTC
AGTTTTGCGATTGACACGGCAGCTGACTCGGTTGTTTGAGTGGACGAATGATGTTGCTGA
TAGATTGGCATTTTCAGATGTTTTGACAAGCGATACTGTCTTCTCAGTTCCTATGACTGA
GACATATTGCCTTCTCGGTGTGGACGCAAAAGACGTCAGTTCACTGGAGAAGTATCTGCA
GGATTATTTCACCAACATACTGAAGAAGTTGAAAGACCTTAAGGCTCAATCAAAGCAAAC
AGATATTTTCTTTTGAGAGGAATACTTGTTTATGTTGTTGTAAAAGTAATATACACTGTG
ACAGGGATACATCAGCAGAGGCATGCTCCTTTTGGAACTTGCAATCTTTCTTTCTTTTTT
TCCTAGTTTATTCCTCGTGTATTCATGAATTTGTAAAGGTTATACGATTTATTTAGTTAG
CGGCCGCTGGTCACCATGAGCTTCAAAGTTATCTCCTCTAGCAGCGGCTAGACGGCGTCA
GCTATGATGAAGACATGCTGGCTGGCAAAACGCCCCTTGCCCTTCCTGTTTTTGAGAATG
CGGATTTGGTTCTGCACATGAAGTATATGGTTGTGTGTATCACCTGGATCCATGGAATAC
AAAGACATAGGCTCCGAGATGATACCCATGATTTGTTCGTAGTTCGAGTCTATTGTTTTC
TACTCCTTTCGTTCCTAAANTAATGTAGTTTTCACCTAAATAAGTTTCCTCTGCG

Homology of Contig U35_35116 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g44000.1	387	6e-57	protein\|uncharacterized protein ycf39, putative, expressed
Brachypodium v1_2	Bradi3g42580.1	390	2e-55
Arabidopsis v10	AT4G35250.1	395	8e-56	NAD(P)-binding Rossmann-fold superfamily protein \| chr4:16771401-16773269 REVERSE LENGTH=395