barSeed - Barley Seed Development Database

Probe CUST_9820_PI390587928

Source Contig U35_11163

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9820_PI390587928	Hv_44K_v2	TTGATCAAAAGAATGCTTTGGCGCTGGCAATTGTTGAACCAGATAACGGGCCTAAAGCTG	356	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251445.1	2276	2e-24	1402 - 1461	100	60 / 60	plus	None
MLOC	MLOC_37885.2	4141	2e-24	2865 - 2924	100	60 / 60	minus	ABC12882 ABC42310
MLOC	MLOC_37885.1	3965	2e-24	2865 - 2924	100	60 / 60	minus	ABC12882 ABC42310
MLOC	MLOC_37885.4	1401	2e-24	128 - 187	100	60 / 60	minus	None
MLOC	MLOC_37885.3	2674	2e-24	1483 - 1542	100	60 / 60	minus	ABC12882 ABC42310
JLOC1	JLOC1_24577.1	2720	8e-25	1154 - 1213	100	60 / 60	plus
Harvest21	ABC26394	433	3e-25	357 - 416	100	60 / 60	plus
Harvest35	U35_11163	434	3e-25	357 - 416	100	60 / 60	plus

Contig Sequence (434 bp)

>U35_11163 434 Hv_44K_v2
CAAAAAAGCACTCAAGCAGGCAGGGCAACTTTCTGGATTTTACGAGACGTGTAGAACCAT
ACATATTGGGCGGGGTGAGAAGCTGTTAACAATCGAACAGCCTCCTGCGTCATTCTTGCA
AGCCATGGAAGATTATGTGAGAGATGCTCCTCTTGCTTCAAAAAATCAGGCTGTACTGGC
AATAGAGTACAACAGAAAACCAGAAGAGGAAGAAGCATCAACTCCACCACCTCCTCCTCC
TCAAGTATCAACTTCAGAGAAAGAACCGGAACCAGAGCCGGTTAAAGAAGTCGCGCCCAG
AGTCGAGCAAATAGATTTGCTGGGGATGGATGAACCGATCCCTGACATGACAGCGCTTGA
TCAAAAGAATGCTTTGGCGCTGGCAATTGTTGAACCAGATAACGGGCCTAAAGCTGCTGC
TGGTTCCGAAAATG

Homology of Contig U35_11163 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None