barSeed - Barley Seed Development Database

Probe CUST_980_PI390587928

Source Contig U35_47392

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_980_PI390587928	Hv_44K_v2	TCTTTTCTTGAGGACCAACTCAGGATGCAAAAGAGCTTAAGAGTTTAGGTTAAGTTTTTT	87	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54964.1	727	2e-24	606 - 665	100	60 / 60	plus	ABC48409
MLOC	MLOC_54964.2	2486	2e-24	32 - 91	100	60 / 60	minus	ABC48409
JLOC1	JLOC1_35422.3	4865	8e-25	2625 - 2684	100	60 / 60	plus
JLOC1	JLOC1_35422.2	4695	8e-25	2455 - 2514	100	60 / 60	plus
JLOC1	JLOC1_35422.1	4736	8e-25	2496 - 2555	100	60 / 60	plus
Harvest21	ABC48409	505	3e-25	88 - 147	100	60 / 60	minus	ABC48409
Harvest35	U35_47392	505	3e-25	88 - 147	100	60 / 60	minus
Harvest35	U35_36224	833	3e-25	671 - 730	100	60 / 60	plus

Contig Sequence (505 bp)

>U35_47392 505 Hv_44K_v2
CTCGAGCATTTTTTGTTTTTTTTTTCAGGCAAAAATATATATTTTATATATATAGGCAAG
GAATTCCACATCAGAAAGCAGGAAGAAAAAAAACTTAACCTAAACTCTTAAGCTCTTTTG
CATCCTGAGTTGGTCCTCAAGAAAAGAGATGGATTGGAAACTACGTACAGCAAAAAGATT
TTAGACATTCAAACCTGACTAGAACAATAATTAGTACTGAAGAACTGCCACCGAGGTGGG
GTCCAGCTTCCTCTTCTTTTTGCCTAGAGGGTCACTTCGAGAGCCCCTGCGGGGCCCCTG
CGCAACATTGTGCTGTGAGTTCAAGCAGTCCAGCAGGCCTTTTCTTCGTGCGGATGGCAT
GCCCCTCATCAACCGTGTTGCATTTTTGTCCACACAAGGGCCCTTAACAGATTTAGATGC
AGAAGCAGCCTTTGGTTTCTTCACCTTCGGTTGATGCTCAGACTTTGGCATCAAAGGAGT
GTCCTTGCCCTCAAATTCCTCAAAC

Homology of Contig U35_47392 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None