- Probe CUST_9809_PI390587928
- Source Contig U35_23146
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_9809_PI390587928 | Hv_44K_v2 | GTCGATAGAATTGTAAGAGCTATGTTGTGTTATGAGCTATGTTGCTAGTTTTTCTTTCCT | 727 | GeneList: yellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.163 | 1.923 | 1.204 | 0.762 | 0.319 | 0.342 |
| Raw | 597.516 | 835.353 | 455.134 | 444.422 | 66.945 | 78.254 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_59304.6 | 3040 | 2e-24 | 2950 - 3009 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_59304.5 | 2795 | 2e-24 | 2705 - 2764 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_59304.4 | 3925 | 2e-24 | 3845 - 3904 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_59304.7 | 2918 | 2e-24 | 2828 - 2887 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_59304.8 | 3127 | 2e-24 | 3037 - 3096 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_38585.14 | 2988 | 8e-25 | 2902 - 2961 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38585.13 | 2767 | 8e-25 | 2681 - 2740 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38585.12 | 2856 | 8e-25 | 2770 - 2829 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38585.11 | 2677 | 8e-25 | 2591 - 2650 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38585.10 | 2892 | 8e-25 | 2806 - 2865 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38585.9 | 3683 | 8e-25 | 3597 - 3656 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38585.8 | 2759 | 8e-25 | 2673 - 2732 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38585.7 | 2886 | 8e-25 | 2800 - 2859 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38585.6 | 3034 | 8e-25 | 2948 - 3007 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38585.5 | 2794 | 8e-25 | 2708 - 2767 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38585.4 | 2960 | 8e-25 | 2874 - 2933 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38585.3 | 3855 | 8e-25 | 3769 - 3828 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38585.2 | 3849 | 8e-25 | 3763 - 3822 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38585.1 | 2702 | 8e-25 | 2616 - 2675 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_23146 | 807 | 3e-25 | 728 - 787 | 100 | 60 / 60 | plus |
Contig Sequence (807 bp)
>U35_23146 807 Hv_44K_v2 CAGTTGCTTGCTGCTGTCCCTAAGACAAAGGAAGAATTATTTGCTTATGATGTTAATTGG GCAATTTATGATAAGCATGGATTGCATGAGAGAATGAGGCCTTGGGTTTCAGAGAAGTCC ACTGAAGTTTTCGGCGAGGAAATAGCAGAATTTGTGGAATATGTTGTTGCATCAACCAAA GAGCATGTTGATGCACCAAGAATGTTGGAAACCCTTGCATCTCTTATGGATGATTCTGCA GAAAATTTTGTCCTCTCGTTGTGGACACAGCTGATATTTGAAATTAAGAAAGTTGAAACC GGATTAGCATGAAGACCAAGGGAATGCCACAATGTCAGTTCCTTGTTGCTCAAGATCGGT GGGTAATCTCAAAGCAATCGGCTCAGTTCCTTCTCGTTGCTTAAGGTTGGTGGGTAATCT CAAAAGAGATTGGCTGATGGCGACCCTCCCTGGCTACCTATTAGCTGCAATTGTTGATAT CTTGGAATGAAGCAGTCAATCTGGGCACTGTGTTCTGGCTATCCTGAATCTTTTGCTGAT GAGTGTAGATAGACTTTGCATGTTGACATTAACAGTGAGCTTTTGTGTTGTAAGTGGAGA AGAAGTGAAATGGGACTCTTTCAGCGTGTCCCCAATGCGGGGAGTCTCTTCGTAGATATG TAAAATTGATAACACATATTTATTCGGACTTGCTGAGTTTTGATCCTCCAACAAGATTCG TGCTGTTGTCGATAGAATTGTAAGAGCTATGTTGTGTTATGAGCTATGTTGCTAGTTTTT CTTTCCTTTGAAAAAAAAAAAAAAAAA
Homology of Contig U35_23146 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |