barSeed - Barley Seed Development Database

Probe CUST_9806_PI390587928

Source Contig U35_23149

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9806_PI390587928	Hv_44K_v2	GAGCTTGTAAATACGATACAGGGAGGAATTCATGCACGTGTAATTTTGCTTGTTTAAAAA	745	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.206	4.743	1.124	0.776	0.561	0.645
Raw	64.183	93.563	19.062	22.142	3.855	5.477

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361722	824	9e-22	764 - 818	100	55 / 55	plus	None
MLOC	MLOC_38595.1	925	9e-22	518 - 572	100	55 / 55	plus	None
JLOC1	JLOC1_25111.1	816	5e-22	516 - 570	100	55 / 55	plus
Harvest35	U35_23149	816	3e-25	746 - 805	100	60 / 60	plus

Contig Sequence (816 bp)

>U35_23149 816 Hv_44K_v2
ACCAAATCCATCATCACCATCATCATCCTCGCCTTATTAAACCAAAACCCCCCGCGCACC
TGATCCTCCAGTGCTGTCTGCCATCACAGCGTCCGTTGCATCGCGCGATCTTTCGTCTTT
AGCTCTGGGAGAGTGGGTCGAGCGGTCGATCGGTCGGGCGGGTGGCATGAGCCCCGGGAG
CGGCAAGCTGCGGTGGCTGTGGAGGGCGCCGGCGCGGGCGTTCGGGCGCGCGCGGGACTT
CTACGTGAGGAGCATCACGGGGTGCGCGCGCTACGTGCCCGCCGACGCGGCCTTCGGCGC
CTACCCGGTGCTCGTGCCGGCGCCGCTGCCCAGGAGCCAGAGCTGCGGCTCCGGCGCCGG
CTGGGACGGCGGCGAGGAGGACCTCCGGGAGCTCATCCGCGCCGCGTCGCAGAGGCGCGA
CGGCGAGCAGCAGCGGCAGGCCGCCCATCTCCATGCCGTGCCCAGGAGCCAGAGCGTGGC
GGGGGCGGCGTCCATGGCGCGGATCGATGAGGACGCGCCGTGCGAGTTCGCCTCCGGCGC
CGCGCTCTACTCCCGCAGCCAGAGCTATGCCGGCGGCGCCTTGGGGGCCAGGAAGTCTCT
CTGCCACAGCAAGGTGGCGGTCCTGGGCTGAGCTAGCTGCCATGCCACTGCCGTGCCGGC
TGCTCCTCGGCTCCTCTCGTGTGTGATCGTTTCATGCTTGTCAAAATTGTTCATGCTGCT
CGGATCCAACTAAAATCGGGACTCTGAGCTTGTAAATACGATACAGGGAGGAATTCATGC
ACGTGTAATTTTGCTTGTTTAAAAAAAAAAAAAAAG

Homology of Contig U35_23149 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g07330.1	163	1e-55
Arabidopsis v10	None