- Probe CUST_979_PI390587928
- Source Contig U35_47393
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_979_PI390587928 | Hv_44K_v2 | TGTTCCCCTGACCGTGCATGAAAATGTTGGCTTTGTTTTCCCCACTTGTTTTGTCGGAAA | 14 | GeneList: greenyellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.188 | 1.191 | 1.565 | 0.983 | 0.756 | 0.842 |
| Raw | 23.916 | 20.973 | 23.466 | 21.943 | 5.174 | 7.188 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC48411 | 413 | 3e-25 | 15 - 74 | 100 | 60 / 60 | minus | ABC48411 |
| Harvest35 | U35_47393 | 413 | 3e-25 | 15 - 74 | 100 | 60 / 60 | minus |
Contig Sequence (413 bp)
>U35_47393 413 Hv_44K_v2 TTTTTTTTTTTTTTTTTCCGACAAAACAAGTGGGGAAAACAAAGCCAACATTTTCATGCA CGGTCAGGGGAACACAATGTACCAAAATTGAGGGGATATGAACTACATCGGGACCTTCAC ATCCTAAAGCAAACCAAAAAGGGGCAAAGCACCAACTACACAATTCTACAGAGCGGGGGG GTAAATATATATCTCAAACTTGGCTACTTCACTACCCTAACTTCAGGTAGGGGCGCAACC AAACCGAAACGCTGGATCAAATGAGGTGCATGGGCAACTCAAAAACCTTGACAGCAAGGA AACATCTTTGCGCAAAATGACCGAACACATGAAGTTCCACTGTTCCCCAGCCGGTTAAAA AATGCTACGGCAGTCGCTAAGGCGGGAGATAACAGGCCAAGGGAAATCAAAAA
Homology of Contig U35_47393 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |