barSeed - Barley Seed Development Database

Probe CUST_9798_PI390587928

Source Contig U35_47100

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9798_PI390587928	Hv_44K_v2	ATGATGAAGCACCCTCTCATTTCTTCCTAAACCTCTTCCTTTTCTGTTGGGGCGTATTTC	600	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38120.1	2298	7e-23	825 - 884	98	59 / 60	minus	ABC16911
MLOC	MLOC_38120.2	2406	7e-23	825 - 884	98	59 / 60	minus	ABC16911
JLOC1	JLOC1_24760.1	1739	4e-23	1415 - 1474	98	59 / 60	plus
Harvest21	ABC50313	552	1e-23	285 - 344	98	59 / 60	minus
Harvest35	U35_47100	707	3e-25	601 - 660	100	60 / 60	minus
Harvest35	U35_48488	552	1e-23	285 - 344	98	59 / 60	minus

Contig Sequence (707 bp)

>U35_47100 707 Hv_44K_v2
TTTTTTTTTTTTTTTTTGATCCAAACATGTAGCTCAATTCATACTAGGAAATGTAGAACA
AACTACATCTTTGAGGCCGGTATACATCCACACTCCTAACTCAGCTCAACGTTGTTCAAC
TCAAACATGTTCATTATTAATTCTACGATCCAATGGACCCTTGCAGTTCAGAAACATCTT
ATCATGTCCTTCCATCAGATGAATAATACAAAGTGACCGAAGAGCGCCGGCGCAAAATAT
CACATGCAGCTCCTCGATCTCACTCACACATATCCTGGCCATCCATTTATTCCCATGATA
TTTTCCTGTGGAAAGTCCACTCGGATGGGTTGATGGTGGATTTGCCGCTGGAGGCGACAA
GGTCATACGGTGAGTCCTCCCCGAACTCGGTCGGCATGGCCTGCCAGTGTAGGCATGGAT
CCCACTCCGCCTCCTTGAGGATCCTCAGGATCTCTTCCACGAGAACTAGTCTCCGTTTTT
TTTTTTTTTTTTTAGAACAATATATCGATGAGTTACATGAAAGAAAATGCTTATAAGTGT
AATACAGATGGACAGAACGGAACAGTGCCAATACCTGATAATTCCCCCGTAAGTTAAGAA
GAAATACGCCCCAACAGAAAAGGAAGAGGTTTAGGAAGAAATGAGAGGGTGCTTCATCAT
TTGGGAAGGATGCTACCCATTGATCATCTTCANTGCTATCTCATGTG

Homology of Contig U35_47100 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None