barSeed - Barley Seed Development Database

Probe CUST_9793_PI390587928

Source Contig U35_11174

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9793_PI390587928	Hv_44K_v2	CTATTGTTGAGAGAGATGCAGCTGTAAAAAATGCAGAGGACGGTGCATCTGATATGAGTA	1168	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.567	1.260	1.121	0.663	0.493	0.402
Raw	348.585	400.553	339.408	272.628	80.855	74.075

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370669	4073	2e-24	1151 - 1210	100	60 / 60	plus	ABC25030
MLOC	MLOC_4644.3	3745	2e-24	2496 - 2555	100	60 / 60	minus	ABC25030
MLOC	MLOC_4644.4	3760	2e-24	2511 - 2570	100	60 / 60	minus	ABC25030
MLOC	MLOC_4644.1	3641	2e-24	2866 - 2925	100	60 / 60	minus	ABC25030
JLOC1	JLOC1_2920.2	3618	8e-25	724 - 783	100	60 / 60	plus
JLOC1	JLOC1_2920.1	3633	8e-25	724 - 783	100	60 / 60	plus
Harvest21	ABC26472	1228	3e-25	1169 - 1228	100	60 / 60	plus
Harvest35	U35_11174	1228	3e-25	1169 - 1228	100	60 / 60	plus

Contig Sequence (1228 bp)

>U35_11174 1228 Hv_44K_v2
CGCCAGTTCATTCCACACGGCGGAAAACATTTCGAAACCCCATCCCCAAAAATCCCCGCC
CCCTCGAAAACTTTCCCGCTCGAACCCCCCAAACCCTAGCCGGATCTCCCGCCGGCGACG
CCCCCGGCGGCCGGCGAGATGCACATCAAGGAGGTCTGCCTGGAGGGCTTCAAGTCGTAC
GCGGGGCGGACGGTGGTGCCGGGATTCGACCCGCTGTTCAACGCCATCACCGGGCTCAAC
GGCTCCGGCAAGTCCAACATCCTCGACTCCATCTGCTTCGTGCTCGGCATCACCGACCTC
CGCGCCGTGCGCGCCGCCTCGCTCCAGGAGCTCGTCTACAAGCAGGGCCAGGCCGGCGTC
ACCAAGGCCACCGTCTCCATCGTCTTCGACAACTCCGACCGCGCCCGCTCCCCGCTCGGC
TACGAGGACTCGGCGGAGATCACCGTCACGCGCCAGATTGTAGTTGGTGGACGGAACAAA
TACCTTATAAATGGCCATCTTGCACAGCCTTCCCGGGTGCAGACTCTTTTCCACTCCGTG
CAGCTTAACGTGAACAATCCCCATTTTCTAATTATGCAAGGGCGTATTACGAAAGTGCTG
AACATGAAGCCTCCAGAAATTCTTTCCATGTTGGAAGAGGCAGCAGGCACAAGGATGTAT
GAAATGAAGAAGGAATCTGCTCTTAAAACACTTGAGAAGAAGCAGAATAAAGTCGAGGAG
ATCAATAAACTTCTTGATGATGAAATCCTTCCTGCATTAGAGAAACTTAGAAAAGAGAGG
TGCCAGTACATGAAATGGGCCAATGATAACACTGAACTAGATCGACTTAAAAGATTCTGT
ATTGCATATGAGTTTGTTCAAGCTGAGAGAGTGCGAGAAAGTGCACTCAGTGATGTCAAA
CAAATCCAGGGAAAGATTGTTGAACTGGATGAAAGCACAGAAAAGCTAAAAGCAGACATA
GATGAAATGGACAAAAACATAGCTACCTTAACTGCTGAAAAAGAAGCCAAACTAGGCGGT
GAGTTGAAGGTTTTGTCAGAGAAAGTGGATAAGCTCTCGCATGCACTTATTAAGGAAACT
TCTCTGATGGATAATCAAGAGGAAACTCTAAGGTCAGAGGAAAAGGCTGCTGATAAGATC
CTGAAGAACATTGAGGACATCAAGAGATCTATTGTTGAGAGAGATGCAGCTGTAAAAAAT
GCAGAGGACGGTGCATCTGATATGAGTA

Homology of Contig U35_11174 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g67740.1	1176	0.0	protein\|chromosome segregation protein, putative, expressed
Brachypodium v1_2	Bradi2g57967.1	1176	0.0
Arabidopsis v10	AT5G62410.1	1175	4e-177	\| Symbols: SMC2, TTN3, ATCAP-E1, ATSMC4 \| structural maintenance of chromosomes 2 \| chr5:25056308-25062436 FORWARD LENGTH=1175