barSeed - Barley Seed Development Database

Probe CUST_9788_PI390587928

Source Contig U35_47105

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9788_PI390587928	Hv_44K_v2	ATCAAGGAGGTCTGCCCCTTGAAGATGAAGGGCAACTTCCCGTTCCCGGACAAGGAGATC	598	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12479.1	2243	2e-24	937 - 996	100	60 / 60	plus	None
JLOC1	JLOC1_8373.1	2237	8e-25	944 - 1003	100	60 / 60	plus
Harvest21	ABC47906	674	3e-25	599 - 658	100	60 / 60	plus
Harvest35	U35_47105	674	3e-25	599 - 658	100	60 / 60	plus

Contig Sequence (674 bp)

>U35_47105 674 Hv_44K_v2
CCCGGGCTGCAGCGGCGACGGCATCCCTGTGTCTGTGTTCGACGTGCCCAAACAGCTGCA
GGTGCACAAGCCGGAGGCCTACGCCCCCCAGTTCATCGCCCTCGGCCCCTACCACCACTG
GCGCCCCGAGCTGTACGAGATGGAGGGCTACAAGATCGACGCCGCCCGCCGCGCGCTCAC
CACCCTCGGGCGCGGCGGCCTCGACGACCTGGTCTCTAAGCTGGCGCTCCACGAGTCCAA
GGTCCGCGCCCACTACCACCGCTACCTCGACCTCGGCGGCGAGACGCTGTCGCTCATGAT
GCTCGTCGACGGCGCGTTCCTGCTCGAGTTCCTCGCGATCCACCACGCCACACCCGCATG
CGTGGCTGAGCGACAGACACACAGGGTGCTCCCGCTCCCGGTGAGCAGTAGGATGGCGCA
CCTCGCCGACGTGGGCGGGACCGGGAGGAAGTCCTCCGCGCACGGCCTCATCCTCCGTGA
CTTGCTCATGCTGGAGAACCAGATCCCGCTCTTGGTCCTCCGAGAGATCCTCGACGCGCA
GCAGTCCGTCCACGAGTCGGAGTCCACCACGCGGCTCAATGCCATGGTCACTGGCCTCAT
CAAGGAGGTCTGCCCCTTGAAGATGAAGGGCAACTTCCCGTTCCCGGACAAGGAGATCGA
CGTTGCCAACCACG

Homology of Contig U35_47105 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g08120.1	587	4e-69	protein\|plant protein of unknown function domain containing protein, expressed
Brachypodium v1_2	Bradi1g47730.1	582	3e-65
Arabidopsis v10	None