barSeed - Barley Seed Development Database

Probe CUST_9787_PI390587928

Source Contig U35_11177

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9787_PI390587928	Hv_44K_v2	TACATGCTGTTGCCAACAAAAGCCAACCGGAGGATGAAGCAGATCGCCGGCGAGATCGAG	70	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354004	2097	2e-24	896 - 955	100	60 / 60	plus	ABC03642 ABC42461
MLOC	MLOC_54637.1	2080	2e-24	1083 - 1142	100	60 / 60	minus	ABC03642 ABC42461
JLOC1	JLOC1_35175.1	2029	8e-25	871 - 930	100	60 / 60	plus
Harvest21	ABC23804	403	3e-25	71 - 130	100	60 / 60	plus
Harvest35	U35_11177	404	3e-25	71 - 130	100	60 / 60	plus

Contig Sequence (404 bp)

>U35_11177 404 Hv_44K_v2
GATCTTCCAGCTTCAGGGCGAGCAGCTCGAGCTCGTCACGCTCGCCATGAGCAAGTTACA
CATCCCTGGTTACATGCTGTTGCCAACAAAAGCCAACCGGAGGATGAAGCAGATCGCCGG
CGAGATCGAGCGGGTCCTCAAGGGCATCATCGCGAAAAGAGAGAGCGCCATGAGAGCCGG
CGAGGCCACGAGCGACGACCTTCTCGGGCTGCTGCTGGAGTCCAACATGGCGCACTGCAG
GGACTCGAACACCGGCACGGGCATCACGACCGACGAAGTGATCGGGGAGTGCAAGCTGTT
CTACTTCGCCGGCGCGGAGACCACGTCGGTGCTGCTCACGTGGACGCTGATCCTGCTCTG
CATGCACCCGGAGTGGCAGGACCGGGCCAGGGAGGAGGTCTTGC

Homology of Contig U35_11177 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g43844.1	532	3e-60	protein\|cytochrome P450 72A1, putative, expressed
Brachypodium v1_2	Bradi2g44300.1	528	5e-73
Arabidopsis v10	None