barSeed - Barley Seed Development Database

Probe CUST_9786_PI390587928

Source Contig U35_47106

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9786_PI390587928	Hv_44K_v2	GCCTTGTCGTTCTAGTGCTTATTTCAGTTTAATTTGTAGAAATAATTCATCAGCGTCATG	43	GeneList: darkgrey MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.103	0.086	1.458	3.860	1.491	1.123
Raw	2.941	3.041	97.955	377.468	58.176	46.461

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12479.1	2243	2e-24	2049 - 2108	100	60 / 60	plus	None
JLOC1	JLOC1_8373.1	2237	8e-25	2056 - 2115	100	60 / 60	plus
Harvest35	U35_47106	641	3e-25	44 - 103	100	60 / 60	minus

Contig Sequence (641 bp)

>U35_47106 641 Hv_44K_v2
TTTTTTTTTTTTTTTTTGGGAAAAAAGAAGATAATTAATTATACATGACGCTGATGAATT
ATTTCTACAAATTAAACTGAAATAAGCACTAGAACGACAAGGCACAGCAGTTGCACGATC
GATATGGATACTACGGGTGGGTACATGCATGCATGACGACGATACTGATACAGAAGAGTT
GCGGCGGGCGATCTAGCTTAGCTAGTCTGCCGGCGTGACGGTGGCAACGGTGTCAGTGAC
CCAGCGGGAGCATGCGTAGACGGAGCAGAAGGCCTGCAAGGTGGTGAGCAGCAGCATGCT
GAGGGTGGCGAGGAAGGTGAGCATCTTCTAGGAGCTGAGCACATACTTGCGCATGCACCG
CTTGGCCTTGACGCGCCACCGCCCGTCGTAGTATCGGTTCACGTCCTCGATCACCGCGTC
CAACTCCGGCACCCTGGAGTGGTGCACCGACCGGCTCATGCCGTTCCACATCCTGGCCGC
CTCCTCGTCGCTCTTCATGCGGTTGAGCAACACGCCGCGCTTGCGGAGCAGCGCCACGTC
CTCGCCCGTGTCCACGATGCCGTTCATCAGCTCCGTGTACCGGGTGAGGGCCAGCGGCCC
CGACGCGGCGGATGACTCGTAGGCCACCAGGTTCCGGAGCA

Homology of Contig U35_47106 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g08120.1	587	9e-51	protein\|plant protein of unknown function domain containing protein, expressed
Brachypodium v1_2	None
Arabidopsis v10	None