barSeed - Barley Seed Development Database

Probe CUST_9774_PI390587928

Source Contig U35_23157

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9774_PI390587928	Hv_44K_v2	CTGCGTGGACGTTGTAAAAAGTAAAGGACATGTATATGTCAATTTTGTCTCTATAGATGT	1008	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365096	2948	2e-24	2819 - 2878	100	60 / 60	plus	ABC14350
MLOC	MLOC_56714.1	2811	2e-24	1415 - 1474	100	60 / 60	minus	ABC08728 ABC14350
JLOC1	JLOC1_36708.2	5065	8e-25	3650 - 3709	100	60 / 60	minus
JLOC1	JLOC1_36708.1	5573	8e-25	4158 - 4217	100	60 / 60	minus
Harvest21	ABC32789	484	3e-25	321 - 380	100	60 / 60	plus
Harvest35	U35_23157	1181	3e-25	1009 - 1068	100	60 / 60	plus

Contig Sequence (1181 bp)

>U35_23157 1181 Hv_44K_v2
GAAGGTGTACAAGGGCACGATGCGCGACGAGACTCTGGTGGCCGTGAAGCGCGGCAACCG
GCGGACGCAGCAGGGGCTACACGAGTTCCCACGGAGATCGAGATGCTGTCCCGGCTGCGC
CACCGGCACCTCGTCTCGCTCATCGGCTACTGCGACGAGCGCGGCGAGATGATCCTCGTG
TACGAGTACATGGCCATGGGCACGCTCCGGAGCCACCTCTACGGCGCCGGCCTCCCGCCC
CTGTCGTGGGAGCAGAGGCTGGAGGCCTGCATCGGCGCCGCGCGGGGGCTGCACTACCTC
CACACCGGCTCCGCCAAGGCCATCATCCACCGGGACGTGAAGTCAGCCAACATCCTCCTC
GACGACACCTTCATGGCCAAGGTCGCCGACTTCGGGCTGTCCAAGAACGGGCCGGAGCTG
GACAAGACGCACGTCAGCACCAAGGTGAAGGGCAGCTTCGGGTACCTCGACCCGGAGTAC
TTCCGGCGGCAGATGCTGACGGAGAAGTCAGACGTCTACTCCTTCGGCGTGGTCCTGCTG
GAGGTGCTCTGCGCCCGCACCGTCATCGACCCGACGCTGCCGCGGGAGATGGTGAACCTG
GCAGAGTGGGCGACGCCATGTCTCAGAAACGGCCAGCTCGACCAAATCGTCGACCAGAGG
ATCGCCGGGACGATACGGCCGGGGTCGCTCAAGAAGCTCGCCGACACGGCCGACAAGTGC
CTCGCCGAGTACGGCGTGGAGCGGCCGACCATGGGGGACGTGCTCTGGTGCCTCGAGTTC
GCGCTGCAGCTGCAGATGGGGTCGTCAGACGGCTCGGAGACCGACACCATGTTGCCGCCG
CCCGTACCCGGGAAAACGCCCCTGGTTCAGCGCAGCCTGTCCACCGCTACCGTGCCGACT
GACGATGCTGCCATGACCACCAACTTGGGTGATCTAGAAGGAATGTCCATGAGCGGAGTA
TTCTCCAAGATGATCAAGAGCGACGAGGTCAGGTAAAGCCAAATAATGCTGCGTGGACGT
TGTAAAAAGTAAAGGACATGTATATGTCAATTTTGTCTCTATAGATGTATACATGACAAA
CGATGTAAATTCTTTCATGTAGAAGATAGCTATATCAAATAGTGATGGAGTGTGTACAGC
GGCCGCTCGAGCATCATCTGGAGGGCCCAATTCGCCCTATA

Homology of Contig U35_23157 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g17300.3	840	2e-149	protein\|TKL_IRAK_CrRLK1L-1.7 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed
Brachypodium v1_2	Bradi1g66160.1	855	8e-156
Arabidopsis v10	AT3G46290.1	830	1e-126	\| Symbols: HERK1 \| hercules receptor kinase 1 \| chr3:17013009-17015501 FORWARD LENGTH=830