barSeed - Barley Seed Development Database

Probe CUST_9767_PI390587928

Source Contig U35_352

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9767_PI390587928	Hv_44K_v2	GTACGTTGTACCATGGGCACTTATGGTATATGGATTATAAATTAATCTAGCTCTATTTGG	674	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15917.1	1490	2e-24	158 - 217	100	60 / 60	minus	ABC00845 ABC00972 ABC41268
JLOC1	JLOC1_10943.1	1183	8e-25	245 - 304	100	60 / 60	minus
Harvest21	ABC00964	856	3e-25	658 - 717	100	60 / 60	plus
Harvest21	ABC00845	753	3e-25	20 - 79	100	60 / 60	minus	ABC00845
Harvest21	ABC30137	597	1e-24	539 - 597	100	59 / 59	plus
Harvest35	U35_352	753	3e-25	675 - 734	100	60 / 60	plus

Contig Sequence (753 bp)

>U35_352 753 Hv_44K_v2
GCGGAACCCAGAAGCAAATCTAGCTATCTCATTGCCACCCTCTCCCCGTGAGCCCACCAC
CACAACTGCACCTTACTCCGTCGAGATGGCTCGCACTGCAGCAACCAAGCTCGCGCTGGT
CGCCCTGGTGGCGGCAATGCTCCTCGTAGCCGCCGACGCGGCCATCACCTGCGGCCAGGT
GAGCTCTGCCTTGGGCCCCTGCGCCGCCTACGCAAAAGGCAGCGGGACCAGCCCTTCTGC
GGGCTGCTGTAGCGGAGTCAAGAGATTGGCCGGCTTAGCTCGGAGCACCGCCGACAAGCA
AGCTACGTGCAGGTGCCTCAAGAGTGTCGCCGGCGCGTACAACGCCGGCAGGGCCGCAGG
CATCCCCTCCAGGTGCGGCGTCAGCGTCCCCTACACGATCAGCGCCGGTGTCGACTGCAC
CAAGATCCACTGATCGAACGCGTGCTTCCATCATAGCCGTTCATACCTCCAGCGATCGAC
GCTTGGTAGGTTGAGGTCACATACACATATATACATATACATGAATAAATCCTCCGTTAT
GTTCTCCATGGGAGAGAGAGAGGAGTACGTACGCTGAGCCAGCTCTACTTGGCCGCTCAC
TGTTGTATCGGTTTTTGTATCAGTGTTTGATTGTTTGTTCACTCCCTTTGAGGAGACACA
TACGGGAGTTTGCTGTACGTTGTACCATGGGCACTTATGGTATATGGATTATAAATTAAT
CTAGCTCTATTTGGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_352 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None