barSeed - Barley Seed Development Database

Probe CUST_9759_PI390587928

Source Contig U35_16200

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9759_PI390587928	Hv_44K_v2	TAAGGAACACAACAACTGTGACCGAGTTCGTTCAAAATGCACTTCTTTCTTTTGCTCAAA	1932	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.159	1.170	1.187	1.007	0.438	0.396
Raw	9015.410	14185.427	12719.763	16699.750	2609.177	2510.983

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60449.1	1981	2e-23	1916 - 1973	100	58 / 58	plus	ABC05223
MLOC	MLOC_60449.2	2096	2e-23	2031 - 2088	100	58 / 58	plus	ABC05223
JLOC1	JLOC1_39418.1	2061	1e-23	1916 - 1973	100	58 / 58	plus
Harvest21	ABC05223	1524	3e-25	1451 - 1510	100	60 / 60	plus	ABC05223
Harvest35	U35_16200	2006	3e-25	1933 - 1992	100	60 / 60	plus

Contig Sequence (2006 bp)

>U35_16200 2006 Hv_44K_v2
CCCGATCCCACCACCACCCCTCTCCTCCCCTCCCCGGAGGAATCTTTACCCCCTTCCAAT
CCAATTATATAAACCCCTCTCCGCCACTCCACTCTCCCAGATCTACACCCTCACCCCACC
CCACCCCGTCTCGCCGGCCGCCCGGCCGCCCCAACGAGTGCATCGGACGAGGTGCGTACC
CAGTTTGTCTTGTCTTCGATACAACCGAAGCTCCTCCACCCCCACCCACTTTCCCTCCAT
TTCTGCGATCTAATCCACGTGAATATCGCCGACTGCTCCGGGCCAGGCCACGGCCATGGA
TCTCCTCGCGGACGCGCAGCCCCAGTGGCTCCTCGCCGGCGCGGCGCTGCTGCTCGCCAC
CGTCGCCTTCCTCAGGGTCCTCCTCGGCTCCGGCCGCGGCGGCAGGCGGGCGCCGCCGAC
GATCCCGTGCGCGCCCGTCGTGGGCGGGCTGCTGCGGTTCCTGCGGGGCCCCATCCCGCT
TATCCGGGCCGAGTACGCCCGCCTCGGCCCCGTCTTCACCGTCCCCATCCTCACCCGCCG
CATCACCTTCCTCATCGGCCCCGACGTCTCGGCGCACTTCTTCAAGAGCAGCGAGTCCGA
CATGAGCCAGCAGGAGGTCTACCGCTTCAACGTCCCCACCTTCGGCCCCGGGGTCGTCTT
CGACGTCGACTACCAGGTCAGGCAGGAGCAGTTCAGGTTCTTCACCGAGGCGCTCAGGGC
CAACAAGCTCCGCAGCTACGTCGACCAGATGGTTGCCGAGGCCGAGGAGTACTTTTCTAA
GTGGGGAGAAAGTGGCACTGTGGATCTGAAGTATGAATTGGAGCACCTCATAATACTGAC
TGCTAGCAGATGCTTGTTGGGAAGGGAGGTGCGAGAAAAGTTGTTTGATGATGTCTCTGC
TCTCTTCCATGATCTTGACAATGGGATGATGCCAATCAGTGTCATCTTTCCCTACCTCCC
AATCCCCGCACACCGCCGCCGTGACCAGGCACGGACACGTTTGGCGGAGATCTTCGCCAC
TATCATCAAGTCCCGCAAGGCCTCTGGACAGTCTGAGGAAGACATGCTGCAGTGCTTCAT
TGATTCCAAGTACAAGAATGGCCGCCAGACCACAGAAAGTGAGGTGACTGGGCTACTTAT
CGCAGCGCTATTTGCTGGACAGCACACTAGCTCCATCACCTCAACCTGGACTGGGGCCTA
CCTGCTTAAGTTCCAGCAGTACTTTGCAGAGGCTGTAGAGGAGCAGAAGGAGGTGATGAA
GAGGCATGGTGACAAGATTGATCATGACATCTTGGCAGAGATGGATGTCCTCTACCGGTG
CATCAAGGAGGCGCTCCGGCTCCACCCACCGCTGATCATGTTGCTTCGCCAATCACACTC
TGACTTCAGCGTGACCACGAGAGAGGGCAAAGAGTTTGATATCCCCAAGGGCCACATCGT
CGCAACATCTCCCGCTTTCGCTAACAGGCTCCCCCATATCTTCAAGAACCCGGACTCGTA
TGACCCTGACCGGTTTGCGGCTGGGAGGGAGGAGGACAAGGTTGCGGGTGCCTTCTCGTA
CATCTCGTTTGGGGGTGGCAGGCACGGGTGCCTTGGTGAGCCCTTCGCATACCTGCAGAT
TAAGGCGATATGGACACACCTCCTGAGGAACTTTGAGTTCGAGCTGGTGTCTCCATTCCC
CGAGAACGACTGGAACGCGATGGTCGTCGGCATCAAGGGCGAGGTGATGGTCAACTACAA
GCGGCGGAAGCTCGTCGTCGACAACTAGAGAGCGGGTGGTCCCGTAGTTGGTGTTTGCTT
CTGTATTTGTTCCATTCAAGTTTTGTTGTCCGCACGCCAGCATGTGAGTGTTGTTTGTCT
CTCCTTTCATCTTTGCCGTTGTCCATTCTCATAGACGGGTTCAGACATAAAATGTGAACA
GACAACCCTATGTAAGGAACACAACAACTGTGACCGAGTTCGTTCAAAATGCACTTCTTT
CTTTTGCTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_16200 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os11g32240.1	491	protein\|cytochrome P450 51, putative, expressed
Brachypodium v1_2	Bradi4g25930.1	491
Arabidopsis v10	AT1G11680.1	488	\| Symbols: CYP51G1, EMB1738, CYP51A2, CYP51 \| CYTOCHROME P450 51G1 \| chr1:3938925-3940585 FORWARD LENGTH=488