barSeed - Barley Seed Development Database

Probe CUST_9753_PI390587928

Source Contig U35_360

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9753_PI390587928	Hv_44K_v2	GAGAAACAGACAGTCCATGCAACGTTTTACTATCTGTGTTGCTGGGAACTTGGATAAAAA	2223	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.319	1.500	1.160	0.888	0.232	0.168
Raw	212.624	378.797	256.986	311.238	28.416	22.204

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC00807	976	1e-23	1 - 60	98	59 / 60	minus	ABC00807
Harvest35	U35_360	2283	3e-25	2224 - 2283	100	60 / 60	plus

Contig Sequence (2283 bp)

>U35_360 2283 Hv_44K_v2
GCTGCAGGAATTCCCACCCAAAGCAAACCCCTCACCCGCACCCGCCCTCCCGAGGCCGCA
GCCTTATCCTCTCCGCCCCGCCTCCGCGCTCCTCCTCCGCTCCGCCAAGGAAAACATGGC
TTCACCATTTGGCGCCACTTCTACCGTTGGGCTCATGGCAGCTCCAACTGGCCTTGTATC
AGACAAGAAGCCATTTTCATTGTCATCTATCTCCCTTGCCGACAGGCCACGCCATGTGCG
CCTTCAGAGGAAATGCAACTTCAGAGTTAAAGCAGCTAAGGAGCTCTACTTCAACAAGGA
TGGCTCAGCCACCAAGAAGCTCCAGGTTGGAGTCAACAAGCTGGCAGATCTTGTTGGAGT
TACATTGGGACCAAAGGGAAGGAATGTTGTTTTGGAGAGCAAGTACGGCTCCCCTAAGAT
TGTCAATGATGGTGTTACAGTTGCAAGAGAGGTTGAGCTGGAGGATCCTGTTGAAAATAT
TGGAGCTAAGTTGGTTAGGCAAGCTGCAGCGAAGACCAACGATTTAGCTGGAGATGGAAC
AACTACTTCTGTCGTCCTTGCTCAGGGGCTCATTGCTGAGGGTGTTAAGGTTATTGCAGC
TGGTGCCAACCCTGTTCAAATTACTCGTGGTATTGAGAAAACAGCGAAAGCACTAGTCCT
TGAACTTAAGAAGATGTCAAAGGAGGTTGAAGACAGTGAGCTTGCCGATGTTGCTGCGGT
CAGTGCTGGCAACAACTACGAAATCGGTAACATGATAGCAGAGGCTATGAGCAAGGTTGG
CCGGAAGGGAGTGGTTACCCTTGAAGAGGGGAGGAGTTCCGAGAACAATCTTTATGTTGT
GGAGGGAATGCAGTTTGAGCGTGGTTATATCTCTCCTTATTTCGTTACCGACAGCGAGAA
AATGACCACCGAGTACGAGAACTGCAAGCTGCTTTTGGTTGACAAGAAAATCACCAACGC
ACGGGATCTTATCAATGTTCTGGAGGAAGCCATTAGGGGTCAATACCCAATCCTGATCAT
TGCTGAGGATATTGAGCAGGAGGCTCTTGCAACCCTTGTTGTCAACAAGCTAAGAGGTTC
TTTGAAAATCTGTGCTATCAAAGCCCCTGGTTTTGGAGAGCGCAAGACCCAGTACCTGGA
CGACATTGCCATCCTCACCGGAGGAACTGTTATCAGAGACGAGGTTGGACTCACACTTGA
CAAGGCAGATAACACAGTTCTAGGAACGGCTGCAAAGGTTGTCCTTACAAAAGAGTCGAC
AACAATAGTTGGTGATGGCAGCACCCAGGAAGAAGTGACTAAGAGGGTTGCACAGATCAA
AAATCTCATTGAGGTAGCAGAGCAAGACTACGAGAAGGAAAAACTCAATGAGAGGATTGC
AAAGCTCGCCGGTGGTGTTGCTGTTATTCAGGTGGGAGCACAAACAGAAACTGAACTTAA
GGAGAAGAAGTTGCGAGTTGAGGATGCTCTAAACGCAACCAAGGCTGCCGTTGAGGAAGG
TATTGTTGTTGGTGGAGGGTGCACTCTTTTGAGGCTGGCTGCTAAGGTTGATGCCATCAA
GGACACCCTGGAGAACGACGAGCAGAAGGTCGGAGCTGAGATAGTGAGGAGGGCGCTGTG
CTACCCACTCAAGTTGATCGCCAAGAATGCTGGTGTCAATGGCAGTGTTGTTACCGAGAA
GGTTCTTTCTAACGACAACTTCAAGTTCGGCTACAACGCAGCCACTGGGCAGTACGAGGA
CTTGATGGCTGCTGGTATCATCGACCCCACTAAGGTGGTGAGATGTTGCCTGGAGCATGC
CGCGTCGGTGGCCAAGACCTTCCTGACGTCGGACGTGGTGGTCGTCGAGATCAAGGAGCC
TGAGCCCGCGCCCCTCGTCAACCCCATGGACAACTCCGGCTTCGGATACTGATGAGCGAC
GGTGGAGTCTCTCCAGAGGATGTGGTTTAATTTTTGGTAGCATGAACCAAGTTTTGAGAG
ATTGATGATGATGATGATGTAGTTTTGAGATAAGAAAAATGCAATGTGATGTGCCTGCCA
GAACGGCGAAATAAGCAGAGAAACATTTAGCGGAAATTTCTTGATGTAATTGGAACAGCT
TACGGCTCTCGTTTTACGCGCAGGAATGTATGCCATTTCACGTCTCAGGTCAAATTTTAA
AAAACAGAGTTGCTATTGCTACTATGTTAGCGTTGTACTAAACGCTCTGGCTGATTTTCA
TCAGAGAAACAGACAGTCCATGCAACGTTTTACTATCTGTGTTGCTGGGAACTTGGATAA
AAA

Homology of Contig U35_360 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g02380.2	602	protein\|T-complex protein, putative, expressed
Brachypodium v1_2	Bradi1g50270.2	600
Arabidopsis v10	AT1G55490.1	600	\| Symbols: CPN60B, LEN1 \| chaperonin 60 beta \| chr1:20715717-20718673 REVERSE LENGTH=600