barSeed - Barley Seed Development Database

Probe CUST_9736_PI390587928

Source Contig U35_30503

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9736_PI390587928	Hv_44K_v2	GCCATTCCATCTCGCCGCATCGGCCGTGTTCGTCCATTGACCGTTCCCTGCTCTTGGTTG	212	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250779.1	1218	2e-24	316 - 375	100	60 / 60	plus	ABC16273
MLOC	MLOC_61466.1	2144	2e-24	1695 - 1754	100	60 / 60	minus	ABC16273
Harvest21	ABC30445	272	3e-25	213 - 272	100	60 / 60	plus
Harvest35	U35_30503	272	3e-25	213 - 272	100	60 / 60	plus

Contig Sequence (272 bp)

>U35_30503 272 Hv_44K_v2
ACGGCGAGGAGGAGGCGGCGACGCCTCGAGTTCACGCCCACGTGGATCGTCGCGCTCGTC
TGCTCCATCATCGTGCTCATCTCCCTCCTCGCCGAGCGATGCCTCCACTACCTCGGCAAG
GTAATCAACCCCTCATCCATCCATCCATCACACGCCCGTTCGCCTGCTTTCATTACCTTC
CGCCGTTTCGCGTCTGCGTTCCCGGTTCCGCCGCCATTCCATCTCGCCGCATCGGCCGTG
TTCGTCCATTGACCGTTCCCTGCTCTTGGTTG

Homology of Contig U35_30503 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None