barSeed - Barley Seed Development Database

Probe CUST_9730_PI390587928

Source Contig U35_30507

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9730_PI390587928	Hv_44K_v2	AATTTGGGCATTGGACCAAACAACATGACATCCGTATTGGAGCGAGATTGGAATGGAGCT	603	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75846.4	3380	2e-24	3064 - 3123	100	60 / 60	plus	ABC00002 ABC00268 ABC00680 ABC37456
MLOC	MLOC_75846.3	3480	2e-24	3224 - 3283	100	60 / 60	plus	ABC00002 ABC00268 ABC00680 ABC37456
MLOC	MLOC_75846.2	3314	2e-24	3063 - 3122	100	60 / 60	plus	ABC00002 ABC00268 ABC00680 ABC37456
MLOC	MLOC_75846.5	3497	2e-24	3055 - 3114	100	60 / 60	plus	ABC00002 ABC00268 ABC00680 ABC37456
JLOC1	JLOC1_50591.1	3489	8e-25	2978 - 3037	100	60 / 60	plus
Harvest21	ABC30452	669	3e-25	604 - 663	100	60 / 60	plus
Harvest21	ABC00680	3411	3e-25	3019 - 3078	100	60 / 60	plus	ABC00680
Harvest21	ABC37456	468	6e-22	332 - 391	97	58 / 60	minus	ABC37456
Harvest35	U35_38617	474	3e-25	260 - 319	100	60 / 60	minus
Harvest35	U35_30507	669	3e-25	604 - 663	100	60 / 60	plus
Harvest35	U35_14211	3451	3e-25	3060 - 3119	100	60 / 60	plus

Contig Sequence (669 bp)

>U35_30507 669 Hv_44K_v2
TGACAGTGGTCTTCTTCTGGATCATCCACAGGACCGACTTCTTCACAAACAAATTCGGTG
TCAGGTCAATCAGGGAAAATGAAACTGAGAAGATGTCTGCACTGTACCTCCAAGTCAGTA
TTGTGAGCCAGGCTCTTATCTTTGTGACTCGTTCTCGCAGCTGGTCCTTTGTTGAGCGCC
CTGGTTTCCTCTTGGTTATCGCCTTCCTTCTCGCGCAATTGGTTGCGACACTCATTGCTG
TGTATGCCAACTGGGGATTTGCAAGGATCAGTGGAATCGGGTGGGGCTGGGCTGGGACAA
CCTCCTGCAGAACAAGACTGCTTTCACCACCAAAGAGAACTACGGCAAAGGGGAGAGGGA
GGCACAGTGGGCTACCGCACAGAGAACACTCCATGGCCTTCAAGCACCTGAGCCGGCTTC
CCACACACTCTTCAACGACAAGAGCAGCTACCGTGAGCTCTCTGAGATCGCTGAGCAAGC
CAAGAGAAGAGCTGAGATTGCAAGGTTGAGGGAGCTCAACACACTCAAGGGGCACGTTGA
GTCCGTGGTGAAGCTCAAGGGCCTTGACATCGACACCATCAACCAAAACTACACCGTGTG
AAGAATTTGGGCATTGGACCAAACAACATGACATCCGTATTGGAGCGAGATTGGAATGGA
GCTCCGCTT

Homology of Contig U35_30507 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g56160.1	952	2e-93	protein\|plasma membrane ATPase, putative, expressed
Brachypodium v1_2	Bradi5g24690.1	952	1e-97
Arabidopsis v10	AT3G42640.1	948	4e-82	\| Symbols: AHA8, HA8 \| H(+)-ATPase 8 \| chr3:14724309-14728062 FORWARD LENGTH=948