barSeed - Barley Seed Development Database

Probe CUST_9722_PI390587928

Source Contig U35_16217

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9722_PI390587928	Hv_44K_v2	CTTGTTACTTGTAACAACAGTTCTGTAAAATAATACTCTGCTTGTGCTGCTTCTTCTAAC	728	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367650	763	2e-24	630 - 689	100	60 / 60	plus	ABC04754 ABC25388 ABC31592
MLOC	AK358446	3178	2e-24	2988 - 3047	100	60 / 60	plus	ABC04754 ABC25388 ABC31592
JLOC1	JLOC1_28811.1	678	8e-25	514 - 573	100	60 / 60	plus
Harvest21	ABC04754	421	3e-25	71 - 130	100	60 / 60	minus	ABC04754
Harvest21	ABC04752	419	3e-25	342 - 401	100	60 / 60	plus
Harvest21	ABC04753	752	1e-24	679 - 737	100	59 / 59	plus
Harvest35	U35_16217	858	3e-25	729 - 788	100	60 / 60	plus

Contig Sequence (858 bp)

>U35_16217 858 Hv_44K_v2
CCCTCCTGTCTCTTCCTCCACCATCCCATCTGTGGGTGCCGCCGGAAGAAAAATCCGCGG
TAGAAAGAGGCGGAGCTGGAGACGAAGCCTGGGAACAATAGAGAGAAGCGTCGGAAGGGG
AGCGAGAGGAAGGAAGGGGAGGGCGAGAGATGGGGATCCGGTTCGTGCTGCTGGTGAACA
AGCAGGGGCAGACGCGGCTGGCGCAGTACTACGAGCACCTCTCCCTCGACGAGCGCCGCG
CCCTCGAGGGCGAGATCGTCCGCAAGTGCCTCGCCCGCACCGACCAGCAGTGCTCTTTCG
TGGAGCACCGGAACTACAAGGTCGTCTACAGGCGCTACGCCTCCCTCTTCTTCCTCGTCG
GCGTGGACAACGATGAGAATGAGTTAGCCATCCTTGAATTCATACATCTTCTCGTGGAAA
CCATGGACCGCCACTTTGGCAACGTGTGCGAGCTCGACATCATGTTCCATCTGGAAAAAG
TGCACTTCATGCTCGAAGAGATGGTGATGAACGGTTGCATCGTGGAGACGAGCAAACAGA
ACATATTGGCGCCCATCCAGCTTATGGAGAAAACCTCGTAAATAGTGTGTGAGCTCAAGA
GCGCCTAGGTTCCTCTTTTGTGTGAGGAGAAATGCCAGACAACTGCTGTATGCATGGGTG
GTTGTGTTCACCCGACTGGAAAATGTGAAATGTCCTGTAATGCTGAAAATGAAGACCCCA
TCATCTTACTTGTTACTTGTAACAACAGTTCTGTAAAATAATACTCTGCTTGTGCTGCTT
CTTCTAACAAAAAAAAAAAAAAAACTGCGCATGAAACATGAGCCACTGCATGGATTTTAT
GAAAAAAAAAAAAAAAAA

Homology of Contig U35_16217 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g30480.1	144	2e-93	protein\|clathrin adaptor complex small chain domain containing protein, expressed
Brachypodium v1_2	Bradi3g35470.1	144	2e-95
Arabidopsis v10	AT2G19790.1	143	4e-86	SNARE-like superfamily protein \| chr2:8527302-8528395 FORWARD LENGTH=143