barSeed - Barley Seed Development Database

Probe CUST_9717_PI390587928

Source Contig U35_374

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9717_PI390587928	Hv_44K_v2	CTCACAAGATGAGAAATCATATATTTTGGTGAAAAAGAAGTCATTCTGACTGGTGCTGTT	1276	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.742	1.067	0.936	1.212	0.773	1.237
Raw	95.113	219.854	168.472	336.970	76.148	132.264

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65067.1	1504	2e-24	36 - 95	100	60 / 60	minus	ABC02155
JLOC1	JLOC1_42788.2	1644	8e-25	1407 - 1466	100	60 / 60	plus
JLOC1	JLOC1_42788.1	2900	8e-25	2663 - 2722	100	60 / 60	plus
Harvest21	ABC02155	1359	3e-25	1277 - 1336	100	60 / 60	plus	ABC02155
Harvest35	U35_374	1359	3e-25	1277 - 1336	100	60 / 60	plus

Contig Sequence (1359 bp)

>U35_374 1359 Hv_44K_v2
GCTTTGTTCGCCTACTGGATAAGAAAGATCGCATCCCTCCCTTCCCAGACGAGCAATAGC
CTTTCCTCGCACCTGCCCCTGTCAATTACCCTTTTGCCCTCACCGGCGGTGTCGACCATC
CGCCGCCGTATCCAGTGCGAGAGCCGGTAGCAGCCCGAGGACTCTCCCATGGCGGCCATA
TCGTCGCTTCCGTTCGCTGCACTGCGCCGAGCGGCCGACTGGAGGCCGTCGACGGCGACT
GCCGCGGTGAGCGTCTCCGGTGGCGTCATGCTCAACGCGAGGGCTCGGCGGGGCTCACGT
TCGGTGGTGCGCTGCGTCATCACTGCCGGTGATATTCCACCTACTGTGGCAGATACAAAG
ATGAACTTCCTGAAGTCGTACAAACGTCCTATTCCAAGCATTTACAGTACAGTTCTACAA
GAACTTTTGGTGCAGCAACATCTGATGAGATACAAAAGTACGTATCAGTATGATCCTGTG
TTTGCTCTTGGATTTGTCACCGTCTATGACCAGCTTATGGAAGGGTACCCCAGCAACGAG
GACAGGGATGCCATCTTCAAGTCATATGTAACGGCGTTAAATGAAGATCCTGAGCAATAC
AGGGCTGATGCACAAAGGATGGAAGAGTGGGCACGCTCACAAAATGGTAATCTGTTAGTT
GAATTTTCTTCCAGAGATGGGGAAATAGAGTCCATTCTGAAAGATATATCAGAAAGGGCC
CAGGGTAAGGGAAACTTCAGCTACAGCCGGTTCTTTGCTGTTGGCTTGTTCCGTTTGCTT
GAGCTCTCAAATGCGACGGAGCCAACCGTACTGGACAAGCTTTGCGCTGCTCTAAACATC
AATAAAAAAAGCGTGGATAGAGACCTTGACGTTTACCGCAACTTACTGTCGAAATTGGTT
CAAGCCAAGGAACTTCTTAAGGAATACGTCGAGAGGGAAAAGAAGAAGAGAGCAGAGAGA
TTGGAGACGCCCAAGCCGAACGAGGCTGTTGCAAAATTCGATGGAAGCACTTATCCCTTG
AAGCATTAACTCAACCTTTCCCCAGAGGAGAGCTTGTCCGGATAACAGATATTAACAGTT
ATACATCTGGATAGCGTTGAGAACTATCGGGGGCATCTTTGGCTGCTCTTAGCGTGGTGT
AGTACTCGGCGGTACAAAAAGATCCAGATTATTCGCAGTAGTTGGTATTTTGTAATTTCT
CCTTCTCTGTGTTCGAATGTACCGTTTTCTTCACTTCGTTGACAATATATGAAGAGTTAT
CTGGTGGTGAATGTTACTCACAAGATGAGAAATCATATATTTTGGTGAAAAAGAAGTCAT
TCTGACTGGTGCTGTTAATCTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_374 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g37250.1	288	7e-148	protein\|THYLAKOID FORMATION1, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi1g24860.3	287	3e-160
Arabidopsis v10	AT2G20890.1	300	1e-105	\| Symbols: PSB29, THF1 \| photosystem II reaction center PSB29 protein \| chr2:8987783-8989185 FORWARD LENGTH=300