- Probe CUST_9713_PI390587928
- Source Contig U35_378
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_9713_PI390587928 | Hv_44K_v2 | CTCTTACAGCTTGACATTTCTCCTCTACGCTTCTGATAATAATAATAATATATGCCAGTG | 708 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.362 | 1.350 | 1.129 | 0.918 | 0.391 | 0.276 |
| Raw | 1559.850 | 2401.187 | 1816.217 | 2225.025 | 340.600 | 265.778 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK369190 | 1587 | 2e-24 | 1512 - 1571 | 100 | 60 / 60 | plus | ABC00592 ABC00909 ABC39409 ABC49627 |
| MLOC | MLOC_67220.2 | 3180 | 2e-24 | 2988 - 3047 | 100 | 60 / 60 | plus | ABC00592 ABC00909 ABC39409 ABC49627 |
| MLOC | MLOC_67220.1 | 1674 | 2e-24 | 1325 - 1384 | 100 | 60 / 60 | plus | ABC00592 ABC00909 ABC39409 ABC49627 |
| JLOC1 | JLOC1_44354.1 | 1644 | 8e-25 | 1324 - 1383 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC26876 | 553 | 3e-25 | 424 - 483 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00909 | 768 | 3e-25 | 1 - 60 | 100 | 60 / 60 | minus | ABC00909 |
| Harvest21 | ABC00592 | 1552 | 3e-25 | 1403 - 1462 | 100 | 60 / 60 | plus | ABC00592 |
| Harvest21 | ABC39409 | 183 | 6e-22 | 29 - 88 | 97 | 58 / 60 | minus | ABC39409 |
| Harvest35 | U35_429 | 1661 | 3e-25 | 1498 - 1557 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_378 | 768 | 3e-25 | 709 - 768 | 100 | 60 / 60 | plus |
Contig Sequence (768 bp)
>U35_378 768 Hv_44K_v2 CACCGTACTTCACCAACGACAAGGGTCGGCGCCATCGACGACTACCGTCGTCACCAAGGT CAACGACCACCACGTCTACCTCGTCGTCAACGCCGGCTGCCGGGACAAGGACCTCGCCCA CATCGGCGCCCACATGGAGGCGTTCCAGAAGAAGGGTGGCGACGTCAAGTGGCACGTCCA CGACGAGCGCTCCCTCCTCGCCCTGCAGGGTCCTCTTGCTGCACCAACTCTCCAGTTGCT GACAAAGGAAGATTTGAGCAAAATGTACTTCAGTGACTTCAAGATGATTGACATCAATGG ATCTGCTTGCTTCCTCACCAGAACTGGCTACACCGGCGAAGATGGATTTGAAATCTCCGT GCCGTCAGAGATCGTGAGCGGCGCCGGGGAGAACATCGGCGAGGTGACGAGCGGCGGGTT CAGCCCGTGCCTGAAGAAGAACATCGCCATGGGGTACGTGAAGAACGGGCTGCACAAGGC CGGCACGGAGTTCAAGGTGGTCGTCCGCGGCAAGCAGTACGACGCCGTCGTCACCAAGAT GCCCTTCGTGCCCACCAAGTACTACAAGGCCCCGTAGAGGCTGTGCGTACAGAAGGAAAA AACAATGGACGGATGCTCCTGCTTGGACTGCAATTTTCTCTCGCGACGCCGCCATGGCGG CTTGTTCGTCATGGTAGGCTGCTGCGTCTGTAACCTCTGTCGGGCTTCCTCTTACAGCTT GACATTTCTCCTCTACGCTTCTGATAATAATAATAATATATGCCAGTG
Homology of Contig U35_378 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os04g53230.1 | 409 | 2e-65 | protein|aminomethyltransferase, putative, expressed |
| Brachypodium v1_2 | Bradi5g22290.1 | 412 | 2e-67 | |
| Arabidopsis v10 | AT1G11860.1 | 408 | 9e-58 | Glycine cleavage T-protein family | chr1:4001801-4003245 FORWARD LENGTH=408 |