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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_9712_PI390587928Hv_44K_v2GTTTGTGATGAAATGTGTAGCTCGCAATTCCATATATGAAGAATGAATGCATTCGCTGCT1855GeneList: yellow
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 2.7412.1791.1280.8350.4740.591
Raw 433.135556.614246.902290.81657.23477.466



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_59407.121022e-242010 - 206910060 / 60plus ABC02779 ABC02780 ABC44343
MLOCMLOC_59407.225502e-241878 - 193710060 / 60plus ABC02779 ABC02780 ABC44343
JLOC1JLOC1_38659.222878e-251875 - 193410060 / 60plus
Harvest21ABC0278219413e-251853 - 191210060 / 60plus
Harvest21ABC027807425e-2323 - 819859 / 60minusABC02780
Harvest35U35_37920003e-251856 - 191510060 / 60plus



Contig Sequence (2000 bp)

>U35_379 2000 Hv_44K_v2
GAAAAGGAGACGTTGGAGGCTTTCCCCTTGCCCCATCCCGAATTAAACCCCTTCCTCCTC
CCAATTCGCGTCTTCACGGAATCCAAACCCCAAACACCATCCATGGCGATGGCGTCCTTC
CGCCTCCTTCCTCTCGCGCTCCTGCTCTCCGTGGCGCACGCGCGGACCCCACGGCTTGAG
CCCACCATCCGGCTGCCGTCGCAGCGCGCCGCCGGGCAGGAGGACGATGACTCCGTCGGG
ACCAGGTGGGCCGTCCTCATCGCCGGCTCCAACGGCTACTACAACTACCGCCACCAGGCC
GATATCTGCCACGCCTACCAGATCATGAAGAAGGGTGGTCTCAAGGATGAAAACATCATC
GTTTTCATGTACGACGACATTGCGCGCAACCCAGAGAACCCAAGGCCGGGCGTCATCATC
AACCACCCCCAGGGTGGAGATGTCTATGCTGGGGTCCCTAAGGACTACACTGGGAAGGAG
GTTAATGTCAAGAACTTCTTTGCTGTCCTGCTCGGTAATAAAACTGCTGTGAATGGTGGG
AGCGGCAAAGTCGTGGACAGTGGCCCTAATGATCACATTTTTGTGTTTTACAGTGACCAT
GGGGGTCCTGGGGTCCTTGGGATGCCTACCTACCCATACCTTTATGGTGACGATCTTGTA
GATGTCCTGAAGAAAAAGCATGCTGCTGGAACCTACAAAAGCCTGGTCTTTTACCTTGAA
GCCTGTGAATCTGGGAGCATCTTTGAGGGGCTTCTGCCGAATGATATCGGTGTCTACGCG
ACCACCGCATCAAACGCAGAGGAAAGCAGTTGGGGAACGTATTGCCCCGGCGAGTACCCG
AGCCCTCCGCCGGAATATGACACTTGCTTGGGCGACCTGTACAGCATTTCTTGGATGGAA
GACAGTGATGTCCACAACCTGAGGACTGAATCTCTCAAGCAGCAGTATAACCTGGTCAAG
AAGAGAACGGCAGCTCAGGACTCATACAGCTATGGTTCCCATGTGATGCAATACGGTTCT
TTGGACCTCAATGCTGAACATTTGTTCTCGTACATTGGGTCAAATCCTGCTAACGAGAAC
ACTACATTTGTTGAAGATAATGCATTGCCGTCGTTATCAAGAGCTGTTAATCAGAGGGAT
GCTGATCTTGTTTATTTCTGGCAGAAGTACCGGAAATTGGCTGAGAGCTCCCCTGCGAAA
AACAATGCTCGTAAGCAATTGCTCGAAATGATGGGTCATAGATCTCATATTGACAGCAGC
GTTGAGCTGATTGGAAACCTTCTGTTTGGTTCTGCGGGTGGTCCAATGGTTCTAAAGACT
GTTCGCCCAGCTGGTGAGCCTCTTGTGGATGACTGGAGTTGTCTCAAGTCTACGGTGCGT
ACTTTTGAATCCCAATGTGGCTCGTTGGCGCAGTATGGAATGAAGCACATGCGGTCCTTT
GCAAACATGTGTAATGCCGGCATTGTTCCTGAAGCGATGGCAAAGGTTGCTGCTCAGGCG
TGCACGAGCTTCCCAACCAACCCGTGGAGTGCCACACACAAGGGTTTTAGTGCTTAAACC
AGAGGTGAAGAAGCAACGTAATCACTATCTCAGCTATTGTACCATATACCAAAGTCCCTT
CCTATTCACACAGGGTTAGTAGTGCTTGAACGAGCCTTAGGTGAATAAGAATTATGCTAT
TATTTCGGCTATTCCATCATACTCCCTCTGTTCCTAAATACTTGTTGTTGGGGAGAACTC
TCCCCGGCAACAAATATTATGGTACAGAGGGAGTAGTACCAAATTATACACTTATAATGT
ACATATACCGTGGTAGAAAGGTGGTTTCCTGTGATTGCTGTACAGACTCATGATAGTTTG
TGATGAAATGTGTAGCTCGCAATTCCATATATGAAGAATGAATGCATTCGCTGCTAAAAA
AAAAAAAAAAAAAAAACGTCCACTGAGTAATCTCATACTTGCATGAGCTGCTATTTTCCC
ATCAAAAAAAAAAAAAAAAA



Homology of Contig U35_379 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os01g37910.15020.0protein|vacuolar-processing enzyme precursor, putative, expressed
Brachypodium v1_2Bradi2g41270.14890.0
Arabidopsis v10AT4G32940.14940.0| Symbols: GAMMA-VPE, GAMMAVPE | gamma vacuolar processing enzyme | chr4:15900557-15903161 REVERSE LENGTH=494