barSeed - Barley Seed Development Database

Probe CUST_96_PI415269222

Source Contig TA36987_4513

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_96_PI415269222	Hv_44K_v2	TAAATATTTATACGTATATGCGTCCGGGAATGGCCGGAGGCTTGTGTCAGAAGAGGAAGA	728	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249287.1	1333	2e-24	1002 - 1061	100	60 / 60	plus	ABC02967
MLOC	MLOC_12171.2	1421	2e-24	1156 - 1215	100	60 / 60	plus	ABC02967
MLOC	MLOC_12171.1	1302	2e-24	1049 - 1108	100	60 / 60	plus	ABC02967
JLOC1	JLOC1_8155.1	1342	8e-25	996 - 1055	100	60 / 60	plus
Harvest21	ABC13090	1249	3e-25	962 - 1021	100	60 / 60	plus
Harvest35	U35_5446	1313	3e-25	1001 - 1060	100	60 / 60	plus

Contig Sequence (890 bp)

>TA36987_4513 890 Hv_44K_v2
CGGCACGAGGCGGAAGCGACGGTGGCGCGTGTGGCTACCAGAGCGCTGTCGGGAACCGGC
CCTTCTCGTCGATGATCGCCGCCGGGAACCCATCGCTCTACAGAGGGGGCAAGGGCTGCG
GAGCTTGCTACGAGGTTAAATGCACCGGTAACCAGGCATGCTCCGGCCAGCCGGCGACCG
TCGTCATCACCGACGAGTGCCCCGGCGGGGCCGCCTGCCTCGGCGAGGCCGCCCACTTCG
ACATGAGCGGCACCTCCATGGGCGCCATGGCGAAGCCTGGCATGGCCGACAAACTCCGGG
CCAGCGGTATCGTCAAGATCCAGTACAAGAGGGTGCCATGCAAGTACCCTGGCATGAACA
TTGCCTTCAAGGTGGACCAGGGCTCCAACCCCTTCTACCTGGAGGTGCTGATCGAGTTCG
AGGACGACGACGGCGACCTCAACACCGTCGACCTCATGGAAGCCAACTGCGGCACCTGGA
CGCCCATGGTGCAGAACTGGGGCGCGCTGTATCGCCTCAACTCCAACACCGGCAAGCCGC
TGCGCGGGCCCTTCTCGCTCCGGCTCACCTCCGACTCCGGCAGGAAGCTCGTCGTCAACA
ACGTCATCCCCGTCAGCTGGAAGGCCGGAGCCACCTACCGCTCCTTGGTTAACTACCCCT
AAGTTGGCTAGTAACCAAGAAGTACAGAGTAATTTAGAACCGTGGGTTAATTTCTACTGC
GGGGATTATAAATATTTATACGTATATGCGTCCGGGAATGGCCGGAGGCTTGTGTCAGAA
GAGGAAGAGTAGGCCATGCTAATATCGTGCTAGCTCTTCCCTCAATGGCCTCTCAGCGCT
CCCCTAGTGATGCGTGTCGTCGATTTGACTGTATTTTGTTTCTCTTCCTC

Homology of Contig TA36987_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g44108.1	293	1e-130	protein\|expansin precursor, putative, expressed
Brachypodium v1_2	Bradi3g50750.1	293	7e-150
Arabidopsis v10	AT2G45110.1	259	2e-78	\| Symbols: ATEXPB4, EXPB4, ATHEXP BETA 1.1 \| expansin B4 \| chr2:18599575-18601237 FORWARD LENGTH=259