barSeed - Barley Seed Development Database

Probe CUST_967_PI390587928

Source Contig U35_6306

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_967_PI390587928	Hv_44K_v2	ATTTTGGGTTGAAGGAGACCAAGTTCATCACTGCTCATGACTCCAACATTTCATGCATGA	712	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363193	1720	2e-24	702 - 761	100	60 / 60	plus	ABC12975
MLOC	MLOC_76647.1	1344	2e-24	590 - 649	100	60 / 60	minus	ABC12975
JLOC1	JLOC1_51113.1	1243	8e-25	594 - 653	100	60 / 60	plus
Harvest21	ABC14058	775	3e-25	713 - 772	100	60 / 60	plus
Harvest35	U35_6306	775	3e-25	713 - 772	100	60 / 60	plus

Contig Sequence (775 bp)

>U35_6306 775 Hv_44K_v2
CGTAACCCCACTAAGGGCTCCGTCGTTGCTTGCTCGTTCGATTTCTTCTCCGCCTCCCGC
ACCGACGTCGACGCCCCGCCTCTCTTCCCTTCCCTCGCTCCTTCGACGGTGGTCGGAGCC
TCGAGGTGTTAAACCGGGGTATTCTGAAGAAGGGCACCTGCACAATCTGGTGTCATCATG
ACATCGCAGGTATCCCCATCACAGGGCGCAGGCGGCAGCGACGTCGAGGACGAGGATGTT
GAGCTGCTGTCGGTTAATTGGAACCAGGACCATAGTTGCTTCAGTGCTGCCACAACCAAT
GACCTCAGGATGTTTAGTTGCAAACCATTCAAAGAGGAATTAAGGAGGGTTTACAAGGAC
GGCGGGTTTCAAATTGTCGAGATGCTGTTCCGTACCAGCATATTTGGCCTTGTGGATCAG
GGATCCGACAAGCAGCATCAGCAAAACAAACTCACCATCTGGGATGATCTCCGTAACCTT
CTCATTGGTGACTTCTCATTCAAGTCCAACATCCGAGCCGTCAAATTGTCCAAGGACTAC
TTTGTGGTTGCTCTCGAGCACAAGATACATGTTTACAGTTTTAAGACTCTGAAGCTCATC
CATCTGATCGATACCACGTCCAACCCGAAAGGATTGTGCTGCCTCTCGCATCATGCAGAC
ACTTCAGTGATGGCCTGCCCTGGGACGCACCAAGGAATTGTTCGGGTTGAGCATTTTGGG
TTGAAGGAGACCAAGTTCATCACTGCTCATGACTCCAACATTTCATGCATGACAC

Homology of Contig U35_6306 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g07400.1	418	4e-80	protein\|WD40-like domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g04210.1	419	9e-77
Arabidopsis v10	AT3G56440.1	391	5e-74	\| Symbols: ATATG18D, ATG18D \| homolog of yeast autophagy 18 (ATG18) D \| chr3:20926874-20928797 FORWARD LENGTH=391