barSeed - Barley Seed Development Database

Probe CUST_9675_PI390587928

Source Contig U35_41264

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9675_PI390587928	Hv_44K_v2	CTGGAGAAAATCGCAAGGTGGAAGAAGACGCCAGCTGGAACAGAAACACCGATATGATAT	443	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357851	1104	7e-23	890 - 949	98	59 / 60	plus	ABC12340
MLOC	AK362962	922	7e-23	676 - 735	98	59 / 60	plus	ABC12340
MLOC	AK368357	1053	7e-23	774 - 833	98	59 / 60	plus	ABC12340
MLOC	MLOC_68507.1	1957	3e-21	930 - 989	97	58 / 60	plus	ABC12340
JLOC1	JLOC1_45330.1	1956	2e-21	976 - 1035	97	58 / 60	minus
JLOC1	JLOC1_45329.2	1455	2e-21	822 - 881	97	58 / 60	plus
JLOC1	JLOC1_45329.1	1512	2e-21	879 - 938	97	58 / 60	plus
Harvest21	ABC12340	660	1e-23	224 - 283	98	59 / 60	minus	ABC12340
Harvest35	U35_41264	503	3e-25	444 - 503	100	60 / 60	plus
Harvest35	U35_19801	660	1e-23	378 - 437	98	59 / 60	plus

Contig Sequence (503 bp)

>U35_41264 503 Hv_44K_v2
CCACCGTCCTCGTCCCCGGGTGCGGCGGGGGGTACGACGCGGTGGCCATGTCCGGCGCCG
GCCGCTCCGTGGTGGGCCTCGACGTCTGCGACGCCGTCATCCAGAGGGCCAGGCGGCGCT
TGTCGTCGGCGTCTACGCCCGACGTGACCTTCGTCACCGCCGACTTCTTCACCTGGACGC
CGCCGGAGCCCTTCCACCTCATCTTCGACTACACGTTCTTCTGCGCCCTTGACCCGTCTC
TGAGGCCGGCGTGGGCGGCGAGGATGGACGAGCTGCTGCGGCCGGACGGAGAGCTCATCA
CCCTCATGTACCTGCCTCAAGACCAGGACTCCGGGCCACCATACAACACGACAGTGTTCG
ACTACGAGGAGGTGCTGAAACCACTGGGTTTCTTCATCGAATCCATCGAGGACAATGACG
TGGCGGTCGAGCCGCGCAAGGGGCTGGAGAAAATCGCAAGGTGGAAGAAGACGCCAGCTG
GAACAGAAACACCGATATGATAT

Homology of Contig U35_41264 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g62670.1	247	3e-78	protein\|expressed protein
Brachypodium v1_2	Bradi1g49130.1	258	4e-61
Arabidopsis v10	AT2G43940.1	226	1e-57	\| Symbols: ATHOL3, HOL3 \| S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr2:18196091-18197664 REVERSE LENGTH=226