- Probe CUST_9674_PI390587928
- Source Contig U35_41265
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_9674_PI390587928 | Hv_44K_v2 | AATATCATCGTTCTGCTGGTATAGAATAATGGCATTGTGGTTGGCTTGTTCGTGTCTTCC | 41 | GeneList: red MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.242 | 1.638 | 1.101 | 0.716 | 0.284 | 0.323 |
| Raw | 375.458 | 771.848 | 452.557 | 457.378 | 66.395 | 79.716 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_56893.1 | 3953 | 3e-21 | 1 - 54 | 100 | 54 / 54 | minus | None |
| MLOC | MLOC_56893.2 | 4152 | 3e-21 | 1 - 54 | 100 | 54 / 54 | minus | None |
| MLOC | MLOC_56893.3 | 3816 | 3e-21 | 1 - 54 | 100 | 54 / 54 | minus | None |
| JLOC1 | JLOC1_36819.10 | 4029 | 8e-25 | 3937 - 3996 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_36819.9 | 4038 | 8e-25 | 3946 - 4005 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_36819.8 | 3693 | 8e-25 | 3601 - 3660 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_36819.7 | 3357 | 8e-25 | 3265 - 3324 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_36819.6 | 3483 | 8e-25 | 3391 - 3450 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_36819.5 | 3808 | 8e-25 | 3716 - 3775 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_36819.4 | 3272 | 8e-25 | 3180 - 3239 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_36819.3 | 3971 | 8e-25 | 3879 - 3938 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_36819.2 | 3754 | 8e-25 | 3662 - 3721 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_36819.1 | 3520 | 8e-25 | 3428 - 3487 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_41265 | 643 | 3e-25 | 42 - 101 | 100 | 60 / 60 | minus |
Contig Sequence (643 bp)
>U35_41265 643 Hv_44K_v2 TTTTTTTTTTTTTTTTTGAAAAATAATAAAGAATTTTAGTTGGAAGACACGAACAAGCCA ACCACAATGCCATTATTCTATACCAGCAGAACGATGATATTCATTTTCTGTAACAATTTA CAACACACGTACAGCTTCACTAATTACAGCAAAACTTTGCATTACTAAGCTTATACAGGG ACTTTTGCCCTTGTCCCCTCGGTATACAAGCCCAACATAATCAAAAAGAAAACATGGCAT GAAAAACTGGACACAAATTTACAATCAACGAACCAATCAATCGAAATCAAATACCTAAGC TCTCCTAGGAACTACTCCTCAATGGCTTGCTATCTGGTATAAAAAGAATCACGCATACTG TACAACCTACAAACAGGAACTCCTGATTTATCCACAGCTGCCGAAGGCTCCACGGTGAGA AAAAAATAACTATTCCCCTCTTTGCAATAAAAACGCAAAGCTTGGGTTTTCACGGACAAA CGGTAGCAAGTCATCATCAGCAATCTCAATGATTGGCATTGTCTTTGTAATATCATCGAG TGAAAAAGGTATACTAGAATCATCATCTAGCAGTATAGAGAAAGTCGTGACAGTATTTGC TTCCTCACGCGCTGCAGCTTTCAAGCTTGATGCGAACTCTGCT
Homology of Contig U35_41265 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |