barSeed - Barley Seed Development Database

Probe CUST_966_PI390587928

Source Contig U35_6307

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_966_PI390587928	Hv_44K_v2	ATCTCAGATTTTCTTCCAAGCAAAGATTCCTACAGTTACTTACCAGAGCAATTGAATGGT	1350	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362960	2898	2e-24	1322 - 1381	100	60 / 60	plus	ABC16065
MLOC	MLOC_4668.3	2060	2e-24	1340 - 1399	100	60 / 60	plus	None
MLOC	MLOC_4668.2	2737	2e-24	1453 - 1512	100	60 / 60	minus	ABC16065
MLOC	MLOC_4668.1	3138	2e-24	1535 - 1594	100	60 / 60	minus	ABC16065
JLOC1	JLOC1_2936.1	3306	8e-25	1615 - 1674	100	60 / 60	plus
Harvest21	ABC16140	1391	3e-25	1332 - 1391	100	60 / 60	plus
Harvest35	U35_6307	1410	3e-25	1351 - 1410	100	60 / 60	plus

Contig Sequence (1410 bp)

>U35_6307 1410 Hv_44K_v2
ACTAGACTAGGAGGAGACTGGTCGACCCAGGGAGCAAACGCCTCCGTACTCCATTCCTCG
AACCCCACCCGCTTCCGGCATCCAAATCCAAGGACCCCTCCATCCCTCCGTCCGTCCATG
CTCCGGTGAGCCAGCAGAGGGTTGCCGTTCTTGCGCCTGGAGGAAGCAGGGTTCCTTCCA
TCTATCCCCTCTGTCCCCGTGTCGAGGGGCGACAAATAACAGCAACAAGGAGGAGGTTCG
TTGCTTTCTCTGCGCGCAGCTTGGTTTTGGGTCGTTCCTACCGCGCGCCAGCAGTTCAAG
GCCCTTACGATTAAGATTGGCAGTCACTCTTCGACAATGGCGAACACGGGTTTATCACGG
CGCAACTCTTGTCCAAAGGTTCACAGCTCATTGTGCAGTGAGTTGACAATGATGCTAGAT
AAAATCTCCTCTATTCTTCCATCAATTGAGGCAGCTCGACCAGGATGTAAAGCAGGAATA
CAGGAATTGTGCAACCTATACCATATAGTTGAGAAAGGAAGACTCATAAGTCAGCACTGC
GTCGAATGTAGCAAACTCTACTTGGCTATTACTGGAGAGGCAATTTTATTACGATGTGAA
AGGGTCAGAGACTCACTTAAACGGAGTCTGTTCCTGATTCAGAATATGGTCCCAACAGTG
CTAGCTAATCAGATTGCTGAGGTCCATAATGACCTTCGAGATGTAAAATTTGTTGTTGAT
CCATTGGAGCAAGAGGCTGGCAAATCAATTTTAGAGATGCTTCGGCAGTCTGATGCAACT
GAAGAACTTGAACTTCAGACATTCGTGCAGGCAGCTTCAAAGTTAAACCTGACATCTCCT
AAAGCTGTCTTGATTGAACGAAGAGCAATCAATAAACTGCTCGATAAGATTACTGGTACT
GATCCAAAAAAGGAGCAGGTTCTTAAGTTCTTCCTATATCTTGTTAAAAAGTATGGAAAG
AACATCAAACCAGACACTGGTGAGCGGAATGAAAATTTACAATCTGAAAGTCGGTCTTTG
AGTTCAAGCTTAAGTCTTGCAAGCAATGCCAGTACTCCTGAAAAGTGCCACAAGCCAACA
TACTTCCAGGGATACGAGTATCAGAGTAGTATGTCTGGAGAAACCACACCACCTACAGAG
TTCTGTTGCCCAATATCAACAAAGCTAATGTGTGATCCTGTGATAATAACATCTGGACAG
ACTTACGAAAGAGAATATATTGAGAAATGGTTCAGTGAGGGACACGACACTTGTCCCAAG
ACACAAATGAAGGTAGAAAACTTTGCGATGATTCCAAATACTTGCATGAGGGATCTCATA
TGCAATTGGTGCAGAGAGCATGGTTTCACAATCTCAGATTTTCTTCCAAGCAAAGATTCC
TACAGTTACTTACCAGAGCAATTGAATGGT

Homology of Contig U35_6307 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g47670.2	771	0.0	protein\|bg55, putative, expressed
Brachypodium v1_2	Bradi3g52800.1	775	0.0
Arabidopsis v10	None