barSeed - Barley Seed Development Database

Probe CUST_965_PI390587928

Source Contig U35_6308

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_965_PI390587928	Hv_44K_v2	GGTTTGTATGTCACCATCATTTTCAGCCTGTGTTTTGTACTTTTTTACATATCAGAAAGG	1175	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.432	1.463	1.006	1.004	0.467	0.542
Raw	1612.650	2584.768	1553.763	2520.428	402.420	503.212

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_8319.1	1388	8e-25	1192 - 1251	100	60 / 60	plus
Harvest21	ABC15572	1049	3e-25	938 - 997	100	60 / 60	plus	ABC15572
Harvest35	U35_6308	1287	3e-25	1176 - 1235	100	60 / 60	plus

Contig Sequence (1287 bp)

>U35_6308 1287 Hv_44K_v2
CCCCAGACCCGCACACACCCGTTCGCCCCTGGCGGCGCCCCTTCGCTCCCCGAAGCATTT
CCTCGAGCAGCTGGTGCGCGCGCGGAGCGGAGGCCATGGCGATGGCGAAGGCCAAATCCA
CCGCCCTCTCCGCCGCCGAAAAGTGCCGGAACATCCTGGGCGCCAGTTGGGAAGCCCACC
TCAACACGATCAAAGCCGACGCCAAGGGAAGCAAGGGGGAGGTTTACACGTCGAGGGTGC
ACTACATGGTCCAAAAGGGCATGCCCTACTTGATTGTCCCCGAGAACGACATGCACAACA
TTAACATTATAATCGATGAGCGGGGTTCTCTCTCGGTGTCCAGTCCAGTCCCAGGCCGCC
TTGCCAGCTTGCTCAAGTCACTCAACAAGTTGCCTCCCCGGGTTGCTATGACCGGTGATG
TCCTGCGCATGAAGGAGACAAAGGTCCCGGTTATAGCTGAAAGCCTTAAGAAAGCTATTC
TGAAGGAACATAAAGCTGCTAGTGAAGCTACTTATGGGGTTTCAACGGTATTGTCTTCCG
CAAGTGCTAGTTGTAGGTCACGCAGCGAAGGTCTCCTCAGCTTGCTCAATGAGGAGAGCT
CTTACAATATCTTGAAGTTTGAAATTGGCTCATGTGTCTTCATAGATTCACTTGGGAGCA
GCCATAATATTGAGTTGGATACTTTTGAACCACCAAAAGCTGACCTGCTATTGCCATTCT
CTGCAAAGCTTATTGATGGTATCAACAGGAGTGACCCAAGGCGGAGAGCACTTATACTTT
TCTGTTTTGAGTATTTTGATGTGACTGCCAGAGATGCACTCTTGGTCTCCATTGATCACC
ATGGATTTGAGGTGCTCGCCAGGGTTCCTGAAAGAGCTACCGCACCTGATGTCCCTCAGC
AATACCACTGGAAAGAGTTCAGGTTCACATTCAAGGAAGCAGTTAAGGATGTTGAGGAAT
TCTGCCGCATGTTGGTCGAGCTAGAAGAAGAAGCTCTGCACAGCGTAAAGAGCTATAGCG
GATTAGGTTGAAAGAGATACCTTTCTCAAACCAAAGGGCACAAGATTCAGATCTTCAGTT
ATGATAATAGATCATCTAAAGAATATAACTTGAATTCGATTTTGTAGATGGTTTGCATTG
TAAAATGACATCATTCGATTGAGAATCAACAGTTAGGTTTGTATGTCACCATCATTTTCA
GCCTGTGTTTTGTACTTTTTTACATATCAGAAAGGAAACTTTTCTGCATATTGCTTGATA
CAAAAACCATTTTTATTGTGTCAGTTA

Homology of Contig U35_6308 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g16870.1	311	3e-154	protein\|expressed protein
Brachypodium v1_2	Bradi1g66580.1	313	4e-171
Arabidopsis v10	AT3G04020.1	304	2e-75	unknown protein; Has 26 Blast hits to 25 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). \| chr3:1040548-1042377 FORWARD LENGTH=304