- Probe CUST_9650_PI390587928
- Source Contig U35_41299
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_9650_PI390587928 | Hv_44K_v2 | GTATATGATGTTAGGCAGCCCCGCGAAATCTTAGAAATGAAGCCAATTGATGTACTTGCA | 673 | GeneList: darkslateblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.001 | 2.591 | 1.588 | 0.842 | 0.283 | 0.283 |
| Raw | 490.251 | 1021.967 | 526.762 | 440.707 | 52.169 | 56.726 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_66290.1 | 1151 | 2e-24 | 938 - 997 | 100 | 60 / 60 | plus | ABC07678 ABC39688 |
| MLOC | MLOC_66289.3 | 2879 | 2e-24 | 1673 - 1732 | 100 | 60 / 60 | minus | ABC03694 ABC07678 ABC39688 |
| MLOC | MLOC_66289.2 | 3896 | 2e-24 | 1730 - 1789 | 100 | 60 / 60 | minus | ABC03694 ABC07678 ABC39688 |
| JLOC1 | JLOC1_43667.1 | 2834 | 8e-25 | 1106 - 1165 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_43666.2 | 3892 | 8e-25 | 1780 - 1839 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC07678 | 1103 | 3e-25 | 959 - 1018 | 100 | 60 / 60 | plus | ABC07678 |
| Harvest21 | ABC39688 | 431 | 6e-22 | 75 - 134 | 97 | 58 / 60 | minus | ABC39688 |
| Harvest35 | U35_41299 | 733 | 3e-25 | 674 - 733 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_17528 | 1081 | 3e-25 | 959 - 1018 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_41300 | 386 | 1e-23 | 52 - 111 | 98 | 59 / 60 | minus |
Contig Sequence (733 bp)
>U35_41299 733 Hv_44K_v2 GCTGCCAAGGACAACTTCCTCGGCAAGTACATCTACAAGGACACGCTCGCCCGGAACCTC GCCACCGTCATTTACAAAGTAAACCATCCTTCATACGTTCGTACGCACTATGAATCTAGT CGCCGGTGTCGTGTACAAGCTGAGAGTTTTGTTTGTGTGCGTGGTGTGTGCAGGACGAGG ATGACATAATTGACCTGGCGAAAGAGCAGTTCCGCGTGCTCAAGGGAGAAACCGAGTTCC GGTACGGCTACAAGATCGTGGAGAAGGGGAACCTCAGGTCTGCACTGGCGACAAGCAACG TGCTCGAGCTCCCAAAGAAAGAAGAGCTCAAAAGTGTAGTTGACAAGGTGAGGGACTTCT TCGGTGAGGTAACCTCGGGCGCCAAAGAATCCTTTGCACAGATAACAGGATCTGCCAGCG CAGCAGAGGCCGAAGCAGAAGGAAAAGCAGAAGACGAGAGGCCCCGCTCCAAGAGACGAG GAAGCAAGAGGAAAGGGAAGCAGCAGAAGCCCAAGCAAGGGTTCAAGCCCGAGAGCTGAT CGGAAGAGTGGGATCGAGTGGACCGCCCGGCTGTAGTTTCCCCCGAGCTGCTCTGTAGCA CACCAGAGGCTTTTTGAGTTTTGCAGTGTAACCTCCCTGTGGGCAACAACAAACTTTGTT CACTTCTCACAGAGTATATGATGTTAGGCAGCCCCGCGAAATCTTAGAAATGAAGCCAAT TGATGTACTTGCA
Homology of Contig U35_41299 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |